Gene Lcho_1020 details

Gene Information

• Locus tag: Lcho_1020
• ID: 6159865
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 1089984
• End bp: 1090463
• Gene Length: 480 bp
• Protein Length: 159 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 641663770
• Product: flagellar export protein FliJ
• Protein accession: YP_001790056
• Protein GI: 171057707
• COG category: [N] Cell motility; [O] Posttranslational modification, protein turnover, chaperones; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG2882] Flagellar biosynthesis chaperone
• TIGRFAM ID: [TIGR02473] flagellar export protein FliJ

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 55
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGACCCACC CGACGCTGCA ACCGCTGTTC GTCCTGCTCG AACAGGCCGA AGGCCACCGT 
GACGAGGCGC TCGCGCGCCA GGCCAGGGCC GAGAAGGCGC TGGCCGCCGC GCAGGCCCAG 
CAGGCCCAGC TGCACGACTA CCGCATCGAA TACGAGAACC GCTGGGGCGC GCAGTTCCGC 
AAGGGCGTGA CGATGACGCT GATGCAGTGT TATCAGGACT TCGTCGCCCG CCTGCACGGC 
GCGGTCGACC TGCAGGGCCA GCAGGTGCAG CGTCTGACGA ATGAATTCGA GCGCATGCGC 
GGCGAGACCC TGGCCGCCGA GCTGCGCGTG GCGTCGGTCA AGAAGCTGAT CGAGCGGCGC 
GAGACCACGA TGGCGCGGCA AACCGAGCGG CGCGACCAGA AATCGCAGGA CGAGATGGCT 
TCGCGGGCGG CCTGGCAGCG CCTGGCCGAT CGCGGCCACG TCAGCCTGTC GCAGATGTAA 

 

Protein sequence

MTHPTLQPLF VLLEQAEGHR DEALARQARA EKALAAAQAQ QAQLHDYRIE YENRWGAQFR 
KGVTMTLMQC YQDFVARLHG AVDLQGQQVQ RLTNEFERMR GETLAAELRV ASVKKLIERR 
ETTMARQTER RDQKSQDEMA SRAAWQRLAD RGHVSLSQM