Gene Lcho_1012 details

Gene Information

• Locus tag: Lcho_1012
• ID: 6160137
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 1082799
• End bp: 1083218
• Gene Length: 420 bp
• Protein Length: 139 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 641663762
• Product: flagellar protein FliS
• Protein accession: YP_001790048
• Protein GI: 171057699
• COG category: [N] Cell motility; [O] Posttranslational modification, protein turnover, chaperones; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1516] Flagellin-specific chaperone FliS
• TIGRFAM ID: [TIGR00208] flagellar biosynthetic protein FliS

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 51
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTTCAGCC AAGCGTCTTC TTACGGTCGT CCTCAGTTCT CGGCTCACCT CTACCACCAG 
GTCGGCGTGG AAACCGGTGT GAGTTCGGCC TCGCCGCACG CTTTGACGCT GATGCTCTAC 
GACGGCTTCC TCAATGCCGT CAAGCAGGCC CGCCGCGCAC TGGCCGAGGG CCGCACGGAA 
GACAAGGGCC GCCACGTCCG CCACGCTGGC CGCATCCTCG ACGAGGGCCT GAAGGCGGCG 
CTGAACCTGA AGTTCGGGGG TGAACTGGCT CTCAATCTGC GCGACCTCTA CGACTACACC 
CAGGTGCGCC TGATGCAGGG CCATGCCCGC AACGACGACG CGGCCCTGGC CGAAGCCCAG 
TCGCTGATCG AACCGCTGCG CGAAGGCTGG GCCGGTATAG CGGCACAGAT GCCGCGCTGA 

 

Protein sequence

MFSQASSYGR PQFSAHLYHQ VGVETGVSSA SPHALTLMLY DGFLNAVKQA RRALAEGRTE 
DKGRHVRHAG RILDEGLKAA LNLKFGGELA LNLRDLYDYT QVRLMQGHAR NDDAALAEAQ 
SLIEPLREGW AGIAAQMPR