| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1008 |
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| Symbol | |
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| ID | 6160170 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1076638 |
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| End bp | 1078656 |
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| Gene Length | 2019 bp |
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| Protein Length | 672 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641663758 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001790044 |
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| Protein GI | 171057695 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGCTC CTGCCGCCGC ACAGTCGCCC CGCCCGAACC CGCGTGCCGT GGCGGCGCGC
AGCCAGCGCG CGCAGCGGGC TTGGCGCGAG GGCTGCGAGC ACCACGCCAA GGCGCGCCAC
AAGGCCGCCC GCGCCGCCTT CACCCGCGCC GTGCAGGATG CCCCGGACGA GGCGCTCTAC
TGGATCAATC TGGCGCGCAG CGAAAAGGCG CTCGGCGCCC GCCAGGCCTG CACCGACGCC
GCACGCCGGG CCACCCGGCT CGACCCGGCG CAGTGGGCCT ACTGCCAGTT CCTGATCGAC
GGCCTGCACG CCACGCGCGC CCACCAGGAG GTGCTCGCGG CACTGGATGA ACATGCCGCC
GCCGTCGCGC CAAGCGATTT GCCCGCGGCC TGGCACCTGG CTCGTGGCCA GGCGCTGTTC
CACCTGGGCC GCGCAGCCGA TGCCGTCCAG CCCTGCCTGC AGGCCCTGAT GCTCGCCAAC
AGCGCGGCGC GCCGCGATGA CGGCAACGTC GTCATGCTCA GGCGCAGCGC CAGCCTGATG
CTGGGGCACA GCCTGGCCAC CCTCAAGCGC CACGCCGAAG CGGCGGTGTG TTTCCGCATG
GGGCTCGATG CCGATCCGCT GGCCGTCGCC AACGCCCTGT ATGCGGCGCA CTACGCCGCC
TGGGCCTGCG ACTGGACGGC CTTGCCCGAC GACCTGCAGC GCCTGCAGCT GGCCGTGACC
GCGGCGCGCG CACTGCCACC GGGCACGCCG CTGCAGGATT TCAGCCCCTT CTGCCTGCTC
GGCCTGAGCG ACGACGCCGC CCTGCTGCGC TGGGCAGCCG AAAACTCCGG CGCCACCGGC
CGCACCGCCG CCGTGCCGCG CAGCGCCCAG CCGGTGCCAC GCGCTGACGG CCGGATCCGG
CTCGGGCTGA TCTCGTCCGA CTTCCACCAC CATGCCACCA GCTTCCTGCT GGTGCAGGCG
CTCGAACACA TCGACCGCAG CCGCTTCGAG CTGCATTTCT ACAGCGGCGG CCCCGACGAC
CGCTCGGCCA CCCGGGCCCG CGTGCTGGCC ACCGCCACCC GGGTGCATGA AGTGCGCGGC
TGGTCGACCG AGCGGCTGGT CGAGCAGATC CGGCAGGACC GCATCGGCGT GCTGTTCGAC
CTCAAGGGCT ACACCGCCGG GCACCGCCTG GACGTGATGG CGCAGCGCCC GGCGCCGCTG
CAGGTCGCGT GGCTGGGTTA CCCGGGCACC AGCGGCGAGC CGGGCATCGA CTACCTGATC
GGCGACCCGA TCGTCACGCC GCTCGCGCAC CAGGGCGACT TCACCGAGGC GATCGCCCAG
ATGCCGCACT GCTATCAGCC CAACGACGGC CAGCGCTCGC GCCCCGTCGC CTGGAGCCGC
CAGCGCTGCG GCCTGCCCGA CGATGCGCTG GTGCTGGCGA GCTTCAACCA GTCGTACAAG
ACCACGCCCG AGGTGTTTGC CGCCTGGTGC CGGATCCTGG CCGCGCAGCC GCGCGCGCTG
CTGTGGATGC TGGTGCCCGA CGCCGACACC CAGGCGCGCC TGCGCGAGGT GGCCGCCGGC
CACGGCGTCG ACCCGCAGCG CGTCGTCTTT GCGCCGTTCG TCGACATCGA ATCCCACCGC
GCGCGTCTGC CGCAGGCCGA CCTGATCCTC GACACCTTCC CCTGCAGCGG TCACACCACC
ACCAGCGATG CGCTGTGGGC GGGCGTGCCG GTGCTGACCT TGACGGGCCG CAACTTCGCG
GCACGGGTGG CCGCAAGCCT GGTTCACACG CTGGGGCTGG ACGAGCTGAT CTGCGACGAC
CTCGCGACCT ACGTCGACCG CGCCATCGAA CTCAGCCGCA GCGACGCCGC CCGCCAGGAT
CTGCGCGACC GTCTGGCCCG TGCGAGCGAG GCCTCGACGC TGTTCGACGG CGCCCGTTTC
GCCACCGACT GGCAGGCCCT GATCGAGCGC ATGGTCGCGC GCCAGGACGC CGGCCTGCCC
CCTGTGCCGC TGGCCGCCGC CGAGCCGGCC GCGCGCTGA
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| Protein sequence | MTAPAAAQSP RPNPRAVAAR SQRAQRAWRE GCEHHAKARH KAARAAFTRA VQDAPDEALY
WINLARSEKA LGARQACTDA ARRATRLDPA QWAYCQFLID GLHATRAHQE VLAALDEHAA
AVAPSDLPAA WHLARGQALF HLGRAADAVQ PCLQALMLAN SAARRDDGNV VMLRRSASLM
LGHSLATLKR HAEAAVCFRM GLDADPLAVA NALYAAHYAA WACDWTALPD DLQRLQLAVT
AARALPPGTP LQDFSPFCLL GLSDDAALLR WAAENSGATG RTAAVPRSAQ PVPRADGRIR
LGLISSDFHH HATSFLLVQA LEHIDRSRFE LHFYSGGPDD RSATRARVLA TATRVHEVRG
WSTERLVEQI RQDRIGVLFD LKGYTAGHRL DVMAQRPAPL QVAWLGYPGT SGEPGIDYLI
GDPIVTPLAH QGDFTEAIAQ MPHCYQPNDG QRSRPVAWSR QRCGLPDDAL VLASFNQSYK
TTPEVFAAWC RILAAQPRAL LWMLVPDADT QARLREVAAG HGVDPQRVVF APFVDIESHR
ARLPQADLIL DTFPCSGHTT TSDALWAGVP VLTLTGRNFA ARVAASLVHT LGLDELICDD
LATYVDRAIE LSRSDAARQD LRDRLARASE ASTLFDGARF ATDWQALIER MVARQDAGLP
PVPLAAAEPA AR
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