Gene Lcho_0993 details

Gene Information

• Locus tag: Lcho_0993
• ID: 6162441
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: -
• Start bp: 1061706
• End bp: 1063586
• Gene Length: 1881 bp
• Protein Length: 626 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 641663743
• Product: feruloyl-CoA synthase
• Protein accession: YP_001790029
• Protein GI: 171057680
• COG category: [I] Lipid transport and metabolism; [Q] Secondary metabolites biosynthesis, transport and catabolism
• COG ID: [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 62
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAGTGAAG CGATCTACAG GCCGACCCAG GTCGGCGGTG CTCTCGAAGC CACGCTCGAA 
GTGCGCCCGG ACGGCAGCCG CGTGCTGCGC TCGACCGAAG CCTTGCGCTG GTTTCCCGAG 
CGCATCACCG ACGCACTGGT GCAGTGGGCC GAGCAGGCGC CCGACCGCAC CTTCGTCGCC 
CGCCGCGAGC GTCTCGCCGA CGGCAGCCGC GGCGACTGGC AGCGCGTCAG CTACCGCGAG 
ATGCTGCAGC GCGCGCAGTC GGTCGGCCAG GCGCTGACCG ATCGCGGCCT GAGCGCCGAG 
CGGCCGGTGG TGATCCTGTC GGACAACGAC CTCGAACACA TGAGCCTGGC GCTCGGTGCG 
ATGTGGGCCG GCATCGCCTA CGCGCCGATC TCGGCCGCGT ACTCGCTGGT CTCGCAGGAT 
TTCGGCAAGC TGCGCCACAT CCTCGACACG CTGAAACCCG GTCTGGTGTT CGCCAGCGGG 
CCGGCGTATG GCCGCGCCAT CGCCGCCTGC GTCGGCACCG ATGTCGAGGT GGTGCTGACC 
GAAGGCACGC TCGACGGCCG CGCCGTCACG CCCTTCACGA CCCTGCTCGA AACGACGCCC 
GGCGCCAGCG GTGCGGCGGC ACACGATGCC GTCGGCCCCG ACACCATCGC CAAGTTCCTG 
TTCACCTCCG GCTCGACCAA GCAGCCCAAG GGCGTGATCA ACACGCACCG GATGCTCTGC 
GCCAACCAGC AGATGATCCG CCAGTGCCTG GCCTTCCTGG CCGAGCAGCC GCCGGTGCTG 
GTCGACTGGC TGCCGTGGAA CCACACCTTC GGCGGCAACC ACAACGTCGG CATCGCGCTC 
TACAACGGCG GCACGCTCTA CATCGACGAG GGCAAGCCGA CGCCCGCCGG CATCGCCGAA 
ACCCTGCGCA ACCTGCGCGA GATCTCGCCC ACCGTCTACT TCAACGTGCC CAAGGGCTAC 
GAGGAAATCG CCACCGCGAT GGACAGCGAT GCCGCCCTGC GCGAGCGCCT GTTCGAGCGC 
GTCAACCTGT TCATGTACGC CGGCGCCGGC CTGTCGCAGG CGATCTGGGA CAAGCTCGAA 
GCACACGGCC AGGCCACGGT GGGCGAGCGC GTGCGCATGA TCACCAGCCT GGGCATGACC 
GAAACCGCGC CGGCCTGCGT GTTCGCGCTC GGCACCGACG TGCGATCGGG CCAGATCGGC 
CTGCCGGCAC CCGGCTGCGA GGTCAAGCTG GTGCCCACCG GCGACGGGCC GTGGGACAAG 
GTCGAGGTCC GCTTCCGCGG CCCGCACGTC ATGCCCGGCT ACTGGCGCGC GCCCGAGCAG 
ACCGCCGAGG CCTTCGACGC CGAAGGTTTC TACTGCACCG GCGACGCGGT CAAGTTCGTC 
GACGAGGCAC ACCCGAACCG CGGCCTGGTG TTCGACGGTC GCATCGCCGA GGACTTCAAG 
CTCTCGACCG GCACCTTCGT CAGCGTCGGC CCGCTGCGTG GCCGCGTGGT CGCCGCCGGT 
GATCCGTGCG TGCAGGACGC CGTCGTCACC GGCCTGAACC GCGACGAACT CGGCCTGCTG 
CTGATCCCGC GCCTGGACGA ATGCCGCCGC CTGGCCGGCC TGCCCGCCAG CACGCCCGCG 
CCCGAGGTGC TGCACCACCC GACGGTGCGC GCGTTCTTCC AGGCGCTGGC CGACAAGCTG 
TGGCGCGCCG GCACCGGCAG CGCCAACCGC GTCGCCCGCC TGCACGTGCT GGCCGAGCCG 
CCGTCGATCG ACAAGGGCGA AATCACCGAC AAGGGCTCGA TCAACCAGCG CGCGGTGCTG 
CAACACCGCG CCGCGCTGGT CGACGCGCTC TACGAAGGCC GCGAGAGCGA CCCGTTCGTG 
ATCCTGCCCA ACAAGAACTG A 

 

Protein sequence

MSEAIYRPTQ VGGALEATLE VRPDGSRVLR STEALRWFPE RITDALVQWA EQAPDRTFVA 
RRERLADGSR GDWQRVSYRE MLQRAQSVGQ ALTDRGLSAE RPVVILSDND LEHMSLALGA 
MWAGIAYAPI SAAYSLVSQD FGKLRHILDT LKPGLVFASG PAYGRAIAAC VGTDVEVVLT 
EGTLDGRAVT PFTTLLETTP GASGAAAHDA VGPDTIAKFL FTSGSTKQPK GVINTHRMLC 
ANQQMIRQCL AFLAEQPPVL VDWLPWNHTF GGNHNVGIAL YNGGTLYIDE GKPTPAGIAE 
TLRNLREISP TVYFNVPKGY EEIATAMDSD AALRERLFER VNLFMYAGAG LSQAIWDKLE 
AHGQATVGER VRMITSLGMT ETAPACVFAL GTDVRSGQIG LPAPGCEVKL VPTGDGPWDK 
VEVRFRGPHV MPGYWRAPEQ TAEAFDAEGF YCTGDAVKFV DEAHPNRGLV FDGRIAEDFK 
LSTGTFVSVG PLRGRVVAAG DPCVQDAVVT GLNRDELGLL LIPRLDECRR LAGLPASTPA 
PEVLHHPTVR AFFQALADKL WRAGTGSANR VARLHVLAEP PSIDKGEITD KGSINQRAVL 
QHRAALVDAL YEGRESDPFV ILPNKN