Gene Lcho_0992 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0992 
Symbol 
ID6162440 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp1060930 
End bp1061694 
Gene Length765 bp 
Protein Length254 aa 
Translation table11 
GC content72% 
IMG OID641663742 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001790028 
Protein GI171057679 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones63 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGATTC AGGGACAAGC CGCACTCGTG ACCGGCGGCG GATCGGGGCT CGGCGCCGCG 
GTGGCGCGTG AACTGGCACG GCTGGGCGCC CGCGTGGCGG TGCTCGACGT CAACGAGGCC
GGCGCGCAAG CCGTCGCGGC CGAGATCGGT GGCGTGGCGA TGCGCTGCGA CATCACCGAC
AGCGCCAGCG TCACCGCCGC GCTCGATGCA GCGCAAGCCG CCCACGGCCC GGCACGCATC
CTGATGAACA TCGCCGGCAT CGGCGGGGCC AAGCGCATCG TCGGCCGCGA CGGCAGCCCG
GCGCCGCTCG AAGACTTCGA GCGCGTGGTG CGCGTCAACC TGATCGGCAC CTACAACATG
ATCCGGCTCG CCGCCGCACG CATGGTCGGC CTCGAACCGC TCGCCGACGG CGAACGCGGC
GTGATGGTCA ACACCGCTTC GGTCGCGGCC TACGACGGCC AGGTCGGCCA GGAGGCCTAC
GCGGCGTCCA AGGGCGGCGT GGTCAGCCTG ACGCTGCCGC TGGCGCGTGA CCTGGCGCAG
TGGGGCGTGC GCGTGGTCAC GCTGGCGCCG GGGCTGTTCG CCACGCCGCT GATGAAGGAA
CTGCCCGAGG CGGTGCAGCA GTCGCTGGCG GCCTCGATCC CGTTCCCGAA GCGGCTCGGC
CACCCGGAAG AATTTGCGGC GCTGGCTGCC CACGTGGTGA TCAACGGCCA CCTCAACGGC
GAGGTGATCC GGCTCGACGG CGCACTGCGC CTGGCGCCGC GCTGA
 
Protein sequence
MQIQGQAALV TGGGSGLGAA VARELARLGA RVAVLDVNEA GAQAVAAEIG GVAMRCDITD 
SASVTAALDA AQAAHGPARI LMNIAGIGGA KRIVGRDGSP APLEDFERVV RVNLIGTYNM
IRLAAARMVG LEPLADGERG VMVNTASVAA YDGQVGQEAY AASKGGVVSL TLPLARDLAQ
WGVRVVTLAP GLFATPLMKE LPEAVQQSLA ASIPFPKRLG HPEEFAALAA HVVINGHLNG
EVIRLDGALR LAPR