Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0992 |
Symbol | |
ID | 6162440 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 1060930 |
End bp | 1061694 |
Gene Length | 765 bp |
Protein Length | 254 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641663742 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_001790028 |
Protein GI | 171057679 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 63 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGATTC AGGGACAAGC CGCACTCGTG ACCGGCGGCG GATCGGGGCT CGGCGCCGCG GTGGCGCGTG AACTGGCACG GCTGGGCGCC CGCGTGGCGG TGCTCGACGT CAACGAGGCC GGCGCGCAAG CCGTCGCGGC CGAGATCGGT GGCGTGGCGA TGCGCTGCGA CATCACCGAC AGCGCCAGCG TCACCGCCGC GCTCGATGCA GCGCAAGCCG CCCACGGCCC GGCACGCATC CTGATGAACA TCGCCGGCAT CGGCGGGGCC AAGCGCATCG TCGGCCGCGA CGGCAGCCCG GCGCCGCTCG AAGACTTCGA GCGCGTGGTG CGCGTCAACC TGATCGGCAC CTACAACATG ATCCGGCTCG CCGCCGCACG CATGGTCGGC CTCGAACCGC TCGCCGACGG CGAACGCGGC GTGATGGTCA ACACCGCTTC GGTCGCGGCC TACGACGGCC AGGTCGGCCA GGAGGCCTAC GCGGCGTCCA AGGGCGGCGT GGTCAGCCTG ACGCTGCCGC TGGCGCGTGA CCTGGCGCAG TGGGGCGTGC GCGTGGTCAC GCTGGCGCCG GGGCTGTTCG CCACGCCGCT GATGAAGGAA CTGCCCGAGG CGGTGCAGCA GTCGCTGGCG GCCTCGATCC CGTTCCCGAA GCGGCTCGGC CACCCGGAAG AATTTGCGGC GCTGGCTGCC CACGTGGTGA TCAACGGCCA CCTCAACGGC GAGGTGATCC GGCTCGACGG CGCACTGCGC CTGGCGCCGC GCTGA
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Protein sequence | MQIQGQAALV TGGGSGLGAA VARELARLGA RVAVLDVNEA GAQAVAAEIG GVAMRCDITD SASVTAALDA AQAAHGPARI LMNIAGIGGA KRIVGRDGSP APLEDFERVV RVNLIGTYNM IRLAAARMVG LEPLADGERG VMVNTASVAA YDGQVGQEAY AASKGGVVSL TLPLARDLAQ WGVRVVTLAP GLFATPLMKE LPEAVQQSLA ASIPFPKRLG HPEEFAALAA HVVINGHLNG EVIRLDGALR LAPR
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