| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0989 |
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| Symbol | |
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| ID | 6162180 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1056822 |
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| End bp | 1058603 |
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| Gene Length | 1782 bp |
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| Protein Length | 593 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641663739 |
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| Product | ABC transporter-related protein |
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| Protein accession | YP_001790025 |
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| Protein GI | 171057676 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0411] ABC-type branched-chain amino acid transport systems, ATPase component
[COG4177] ABC-type branched-chain amino acid transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 61 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGATGA CCCGCTCGCG CCTGTTCATC GCACTGGTGG TCCTGACGGC ATTGCTGCCG
CAGCTGCCGG TGCCCGAGTT CTGGATCACC CAGCTCAACT ACATCGGCCT GTACGCCATC
GTCTCGCTCG GCCTGGTGCT GCTGACCGGC GTGTCGGGGC TGACCTCGTT CGGCCAGGCG
GCGTTTGTCG GCCTGGGCGC CTACACCACC GCCTACCTCA CCACGCAGTG GGCGATGTCG
CCGTGGCTGA CGGTGTTCAT CGGTGTCGGC ATCACGGTGA TCACCGCGCT GGTGCTGGCC
GCGATCACCC TGCGCATGTC GGGCCACTAC CTGCCGCTGG CGACGATCGC CTGGGCGCTG
TCGCTGTACT ACTCGATGTC GAACATGGAG TTCCTCGGCA AGTACGACGG CATCCTGGGC
GTGCCGGCGA TGAGCCTGTT CGGCTTCAGC CTGGCCTCGG GGCGCAGCTA CTTCTACCTG
ATCTGGATCG TCGCGCTGCT CAGCGCGGTG GCGGTGATCC GTCTGCTCGA TTCGCGCAGC
GGCCGCGCCA TCCGTGCGCT CAAGGGCGGC GTGACGATGG CCGAGGCGAT GGGCATCTCG
ACCTACCGCT ACAAGGTGCT GGCGTTCGTG CTGGCGGCGA TCCTGGCCTC CCTCTCGGGC
TGGCTCTTTG CGCACCTGCA GCGCACCGTC AACCCGTCGC CGTTTGCGCT CAGCAAGGGC
ATCGAGTACC TGTTCATGGC GGTGCTGGGC GGCATCGGCA ACGTCTGGGG CGCCTTCACC
GGCGCGGCGG TGGTCAAGCT GCTCGAAGAC CAGCTGCAGG TGCTGCTGCC CCGGCTGATC
GGCGGCAGCG GCAACTACGA GATCATCGTC TTCGGCATCG TGCTGGTGGT GGTGCTGAAG
TACGCGCCGC AAGGCCTGTG GCCCTTCATC GAGCGGCTCG GCGCACGCTG GCTGCCGTCG
AGCCAACGCG TGCGCGACTG GGATGGCGCC GCCCCGCTGC CCGAGCGCGA CAAGCCCCAA
CCTGGCGAGC TGCTGCTCGA CGTGCAGGCG GTGCGCAAGC AGTTCGGCGG GCTGGTGGCG
GTCAACGACG TCAGCTTCTC GATCCGGGCC GGCGAGATCA TGGGCCTGAT CGGGCCCAAC
GGCGCCGGCA AGTCGACCAC CTTCAACCTG ATCACCGGCG TGCTGGGGCT GACCCGCGGC
GAGGTGCTGT TCCGCGGCCA GAAGGTCGGC GGGCACAGCT CGCGCGAGAT CGCCCGGCGC
GGCATGTCGC GCACCTTCCA GCACGTCAAG ATGCTGCCCG ACATGACGGT GCTGGAGAAC
GTCGCGCTCG GCGGCTACCT GCGCAGCAAG AAGGGCGTGC TGGCGGCGAT GCTGCGGCTC
GACCGCGACG AAGAACGCGG CCTGTTCGCC GAGGCCGAAC GCCAGCTGCA GCGCATCGGC
ATGGGCGCGC AGATGCACGA GCTGGCCGGC AACCTGGCAC TGGGCCCGGC GCGGCTGATG
GAGATCGCCC GCGCGCTGTG CACCGACCCG GCGCTGCTGC TGCTGGACGA GCCCGCCGCC
GGCCTGCGCC ACAAGGAAAA GCAGGCGCTG GCCGAGGTGC TCAAGCAGCT CAAGGCCGAA
GGCATGAGCA TCCTGCTGGT CGAACACGAC ATGGACTTCG TGATGAACCT GACCGACCGC
ATCGTGGTGA TGGAGTTCGG CACCAAGCTG GTCGAAGGCA CGCCGCTGGA GGTTCAAGAG
AGCCCGCAAG TGCGCGCCGC TTACCTCGGG ACGGAACACT GA
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| Protein sequence | MLMTRSRLFI ALVVLTALLP QLPVPEFWIT QLNYIGLYAI VSLGLVLLTG VSGLTSFGQA
AFVGLGAYTT AYLTTQWAMS PWLTVFIGVG ITVITALVLA AITLRMSGHY LPLATIAWAL
SLYYSMSNME FLGKYDGILG VPAMSLFGFS LASGRSYFYL IWIVALLSAV AVIRLLDSRS
GRAIRALKGG VTMAEAMGIS TYRYKVLAFV LAAILASLSG WLFAHLQRTV NPSPFALSKG
IEYLFMAVLG GIGNVWGAFT GAAVVKLLED QLQVLLPRLI GGSGNYEIIV FGIVLVVVLK
YAPQGLWPFI ERLGARWLPS SQRVRDWDGA APLPERDKPQ PGELLLDVQA VRKQFGGLVA
VNDVSFSIRA GEIMGLIGPN GAGKSTTFNL ITGVLGLTRG EVLFRGQKVG GHSSREIARR
GMSRTFQHVK MLPDMTVLEN VALGGYLRSK KGVLAAMLRL DRDEERGLFA EAERQLQRIG
MGAQMHELAG NLALGPARLM EIARALCTDP ALLLLDEPAA GLRHKEKQAL AEVLKQLKAE
GMSILLVEHD MDFVMNLTDR IVVMEFGTKL VEGTPLEVQE SPQVRAAYLG TEH
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