Gene Lcho_0985 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0985 
Symbol 
ID6161998 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp1053136 
End bp1053699 
Gene Length564 bp 
Protein Length187 aa 
Translation table11 
GC content63% 
IMG OID641663735 
Productoligoribonuclease 
Protein accessionYP_001790021 
Protein GI171057672 
COG category[A] RNA processing and modification 
COG ID[COG1949] Oligoribonuclease (3'->5' exoribonuclease) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones68 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGAGC CCGTGCAACT GCCCCGCAAT GACCTGAACC TGATCTGGAT CGACATGGAG 
ATGACCGGTC TCGACCCGAT GACCGATCGG GTGATCGAGA TCGCGGTGGT CGTCACCGAC 
GCCCAGCTGA CCGTGCGCGT CGAAGGCCCG GTGATCGCGG TGCACCAGAG CGACGAGGTG 
CTCGACCGCA TGGACGCCTG GAACCGTGGC ACCCACGGCA AGAGCGGCCT GACCGAGCGC 
GTCAAGGCCT CGACCATCGG CGAGGATCAG GCGCAGGATC AGATGATCGA GTTCCTGAAG 
CAGTACGTCA GCAAGAAGAC CTCGCCGATG TGCGGCAACA GCATCTGCCA GGACCGCCGC 
TTCATGGCCA ACTACATGCC CCGGCTGGAA GAGTTCTTCC ACTACCGCAA CCTCGACGTG 
TCGACGCTCA AGGAGCTGGC GCGGCGCTGG AAGCCGGAGA TCATGGACGG CTTCAAGAAG 
CACCAGAAGC ACACCGCGCT GGCCGACATC CACGAGTCGA TCGACGAGCT GCTGTACTAC 
CGCCAGCATC TGCTGACGGT CTGA
 
Protein sequence
MTEPVQLPRN DLNLIWIDME MTGLDPMTDR VIEIAVVVTD AQLTVRVEGP VIAVHQSDEV 
LDRMDAWNRG THGKSGLTER VKASTIGEDQ AQDQMIEFLK QYVSKKTSPM CGNSICQDRR 
FMANYMPRLE EFFHYRNLDV STLKELARRW KPEIMDGFKK HQKHTALADI HESIDELLYY 
RQHLLTV