| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0984 |
|---|
| Symbol | |
|---|
| ID | 6161997 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 1051781 |
|---|
| End bp | 1053064 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641663734 |
|---|
| Product | Ste24 endopeptidase |
|---|
| Protein accession | YP_001790020 |
|---|
| Protein GI | 171057671 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0501] Zn-dependent protease with chaperone function |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 68 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGAGA ATGATTCGAT GAGTTCTGCA TTCCTGACGA TCCTCTTTGC CGTCGCCCTG
GTGCTGATGC TGGGTCTGCG CCTTTGGCTG ATCAGCCGCC AGATCCGCCA CGTGGCGCAG
CATCGCGGCG CGGTGCCGCC GGCGTTCGTC GGCGTGGTGA GCCTGTCATC GCACCAGAAG
GCCGCCGACT ACACCATCGC GCGCCAGCGT TTCGAGCTGC TGACCACCGC CTGGAGCGCC
GCGGCGCTGG TCGGCTGGAC GCTGCTGGGC GGGCTCGACA CCCTCAACGC CTGGATGCTC
GACACGGTCC GGCCGGCCTG GGGCGACATG GCCTATCAGC TCGGCCTGCT GCTGGGCGTC
ACGCTGATCG GCGCGGCGCT CGACCTGCCG TTCGACCTGT GGCGCACCTT CCGCATCGAG
CAGCGCTTCG GCTTCAACCG CATGACGCCC GGCCTGTGGC TGCGCGACCT GCTGGTCAGC
GGCACGGTGG GCCTGGTCAT CACGCTGCCG CTGGTGGCGG CGCTGCTGTG GCTGATGGCC
AGCGCCGGCA GCCTCTGGTG GCTGTGGGCG TTTGCGCTGC TGGCGGCCTT CACGCTGCTG
ATGCAGGTGC TCTACCCGAC GGTGATCGCG CCACTGTTCA ACAAGTTCGA GCCGCTCGCC
GACACCGCGA TGGTGCAGCG CGTGCAGGCG CTGATGCAGC GCTGCGGCTT CAAGGCCCAG
GGCCTGTACG TGATGGACGG CAGCAAGCGC TCGGCGCACG CCAACGCCTA CTTCACCGGC
TTCGGCGCGA GCAAGCGGGT GGTGTTCTTC GACACCCTGC TCAAGCGCCT GTCGCCCGAG
GAGATCGAGG CGGTGCTGGC GCACGAGCTC GGCCACTTCC ACCACCGCCA CGTGCCCAAG
CGCATCGCCA CCGTGATGGC GGTGTGGCTG TTCAGCCTGG CGCTGCTGGG CTGGCTGATG
GGCCAGCCGG CGTTCTACGT CGGCCTGGGC GTGACACCCG ACATCCTGGC GCCCAACCAC
GGCCTGGCGC TGGTGCTGCT GATGATGGTC GGCCCGGTGT TCAGCTTCTT CGTCACGCCG
CTGACGGCGG CGCTGTCGCG CCGCCACGAG TTCGAGGCCG ACGCCTACGC CTGCGCCCAG
ACCCGCGCGC AAGACCTGTC GGGCGCGCTG CTCAAGCTCT ACGAAGACAA CGCCAGCACG
CTCACGCCCG ATCCGATCTA CGTGCGCGTG CACTACTCGC ACCCGCCGGC CAGCGAGCGG
CTCGCCGCCC TGCCCGGCCA CTGA
|
|---|
| Protein sequence | MGENDSMSSA FLTILFAVAL VLMLGLRLWL ISRQIRHVAQ HRGAVPPAFV GVVSLSSHQK
AADYTIARQR FELLTTAWSA AALVGWTLLG GLDTLNAWML DTVRPAWGDM AYQLGLLLGV
TLIGAALDLP FDLWRTFRIE QRFGFNRMTP GLWLRDLLVS GTVGLVITLP LVAALLWLMA
SAGSLWWLWA FALLAAFTLL MQVLYPTVIA PLFNKFEPLA DTAMVQRVQA LMQRCGFKAQ
GLYVMDGSKR SAHANAYFTG FGASKRVVFF DTLLKRLSPE EIEAVLAHEL GHFHHRHVPK
RIATVMAVWL FSLALLGWLM GQPAFYVGLG VTPDILAPNH GLALVLLMMV GPVFSFFVTP
LTAALSRRHE FEADAYACAQ TRAQDLSGAL LKLYEDNAST LTPDPIYVRV HYSHPPASER
LAALPGH
|
|---|
| |