| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0980 |
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| Symbol | |
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| ID | 6161993 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1045405 |
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| End bp | 1048971 |
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| Gene Length | 3567 bp |
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| Protein Length | 1188 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641663730 |
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| Product | DNA polymerase III, alpha subunit |
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| Protein accession | YP_001790016 |
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| Protein GI | 171057667 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 61 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTTTG TCCACCTGCG CACCCACACC GAATACTCCG TCGTCGACGG CACCTTGCGG
ATCGACGAGA TCGTCAAGAC CGCGGCCAAG GATGGCCAGC CGGCGCTGGC GATCACCGAC
CTGGCCAACC TGTTCGGCGC GATCAAGTTC TACAAGGAAG CGAACAAGCG GGGCGTCAAG
CCGATCATCG GCGCCGACAT CTGGCTCGAA CCCGAAGGCA TCGGCGCCGC CGGCGAGGTG
CGCCCCGCCA CACGGCTGCT GCTGCTGGTG CAGAACGAGC CCGGTTATCT GAACCTGTGC
GAGATCCTGT CGCGCGCCTG GGTGCAGAAC GTGCAGCGCA ACCAGGCGTG GGTGAAGTGG
GAGTGGCTGG ACGAACTCAA CGGCGGCCTG ATCGCGCTGT CGGGCGGGCT GATGGGCTGC
GTCGGCCAGT CGCTGGCGCA GGGCGACACG GTGCGAGCGG CCGAGCTGGC GCGCAAGCTG
GCGGCGATCT TCCCGCGCCG TTTCTATCTG GAGGTGCAGC GCGCCGGCCT GCCCGGCCAC
GATGCGCTGG TGCTCGCCAC CGTGCCGCTG GCCGCGCAGC TGCAGCTGCC GGTGGTGGCC
ACGCACCCGA TCCAGTATCT GGCGCCCGAT GATTTCGACG CCCACGAGGC GCGCGTGTGC
GTGGCCGAGG GCGAGACCAT CGCCAACCCG AAGCGCCCGC GGCGCTTTGG CCGCGACCAG
CATTTCAAGA CCCAGGCCGA GATGGAGGCG CTGTTTGCCG ACGTGCCCAC CGCGCTGGCC
AACACGCTGG AGATCGCCCG CCGCTGCAGC CTGCGGCTGG TGCTGGGCAA GCCGCAGCTG
CCGAACTTTC CGACGCCGAC GCTGGCCGAC GGCTCGTCGA TGCCGATGGA GGACTACTTC
CGCCAGCTGT CGTACGAGGG GCTGGAGGAG CGGCTGGCGC TGCTGTATCC GAAACCGGAA
AAACGCGACG CCGAGCGGGC GCGCTATCTG GAGCGGCTCG AATTCGAGCT GACCACCATC
CTGAAGATGG GCTTTCCGGG CTACTTCCTG ATCGTGTCGG ACTTCATCCG CTGGGCCAAG
GCCAACGGCT GCCCGGTCGG GCCGGGCCGG GGTTCGGGCG CGGGCTCGCT GGTGGCCTAC
GTGCTGTCGA TCACCGACCT CGACCCGCTG CACTACAACC TGCTGTTCGA GCGTTTCCTG
AACCCCGAGC GGGTGTCGAT GCCCGACTTC GACATCGACT TCTGCCAGGG CAACCGCGAC
CGCGTGATCG ACTACGTGAA AGATCGTTAC GGCCGCCCGG CCGTGAGCCA GATCGCCACC
TTCGGCACGA TGGCGGCCAA GGCGGCGCTG CGCGACATCG GCCGCGTGCT GGGCATGGGC
TACGGCCACG TCGACTCGAT CGCCAAGCTG ATCCCCGCGC CGCCGGGCAA GAGCGTGACG
CTGGCGCGTG TGCCCGAGAA GGCCGAGGAC CGCGACGGCG GCGTGATCTA CGCCCGCCTC
GAAGCACCCG AACTGGAAGA GCGCGAGAAG AACGAAGAAG AAGTCGCCGA GCTGCTGAGC
CTGGCGATGC GCGTCGAGGG CATGGTGCGC AACATCGGCA TGCACGCCGG CGGCGTGCTG
ATCGCGCCGG GCAAGATCAC CGACTTCTGC CCGCTCTACC AGCAGCCCGG CAGCGATTCG
GCGGTCAGCC AGTACGACAA GGACGACGTC GAGGCGATCG GCCTGGTCAA GTTCGACTTC
CTGGGCCTGG CGACGCTGAC GATCCTGGAG CTGGCCAAGG AATTCATCGT CGCGCGCCAC
GAGAACCGCA AGGATTTCGC CTTCGAGACC ATCCCGCTCG ACGACGCGGC GGTCTACAAG
CTGTTTTCGG ATGGGCTGAC CGAGGCGGTG TTCCAGTTCG AATCGGGCGG CATGCAGCGC
ATGCTGAAGG ACGCAAAGCC GAGCCGGCTG GAAGACCTGA TCGCCTTGAA CGCGCTCTAT
CGCCCCGGCC CGATGGACCT GATCCCGAGC TTCGTCGCGC GCAAGCACGG CAAGGAGCCG
GTGGAGTATC CGCACCCGAT GGTCGAATGG GTGCTGTCGG AGACCTACGG GATCATGGTC
TACCAGGAGC AGGTGATGCA GACCGCCCAG GTGCTGGGCG GCTACAGCCT GGGCGGCGCC
GACATGCTGC GCCGGGCGAT GGGCAAGAAG AAGGCCGAGG AGATGGCCGA GCACCGCGCC
ATCTTCCGCA AGGGTGCGGC GGGCAACAAC ATCAGCCAGG ACAAGGCCGA CGAGATCTTC
GACCTGATGG AGAAGTTCGC GGGCTACGGC TTCAACAAGT CGCACGCCGC CGCCTACTCG
CTGCTGGCGT ATCACACGGC CTGGATCAAG GTGCACCACA CGGCCGAGTT CTTCGCGGCC
AACATGACGA TCGAGCTCGA CGACACCGAC AAGCTGCGGG TGCTGCGTCA GGATGCGCTG
AAGTTCGGCG TGCAGTTCGA GTCGCCGGAT GTCAACGTGG GCGTCTACCG CTTCGAGCCC
GCACCGGGCA AGGCCGGCAA CAAGCTGATC CGCTACGGGC TGGGCGCGAT CAAGGGCACC
GGCCAGGGCG CGATCGAGGC CATCATCGCC GCGCGCAACG AGGGCGGGCC GTTCCGCTCG
ATCTTCGATT TTTGTGCCCG GGTCGACCGC AAGAGCATCA ACAAGCGCGT GATCGAGGCG
CTGGTCAAGG CCGGCGCCTT CGACAAGCTG CACCCCAAGG GCCTCGACGG CCGCGCCGAG
CTGCTGGCCA GCGTCGGCCT GGCGCTCGAA TACGCCGGCA CCCAGGCCGC CCACGCCGAT
CAGAGCGGGC TGTTCGACTT CGGTGGCGGC GACGACCACG GCAGCTCGAC CCGCGAGCCC
GACTACGTGG CCGCCGAGAC CTGGGACGTC AAGCAGCGGC TGTCGCACGA GAAGATCGCG
ATCGGCTATT TCCTGTCCGG CCACCTGTTC GACCAGGTGG CGGCCGAGGT GCGCCAGTTC
GCCAAGCGCC GCATCGAGGA CCTGTCCGAC AGCCGCGATC CGCAGACGCT GGCGGGCATC
GTCACCGACC TGCGCATCGT CAACGGCCAC CGCGGCAAGG TGGCGATCTT CAAGCTCGAC
GACAAGACCG CCGCGATCGA GGCGGTGGTG GCCGAGGAAC TGCTCAACGC CAACGCCGCG
CTGCTCAAGG ATGACGAGCT GCTGATCCTG CAAGGCAAGG CGCAGCCCGA CCGTTTCAGC
GGCGGCGTGC GTTTCAACGT GATCCAGATC CTCGACCTGC CCACCGCCCG CTGCCGCCAC
GGCCGCTACC TGCGCGTGCC GGCCACCGAC AACCTGCCGC CGGTGGATCA GGTGCTGCGC
GACTTTCCGG CCAGGAGCAT CAGCACCGAA CACGGCGAGC TGGTGCAGGG CGTGCCGATC
CGGCTGGTGG TCGAGCGGGA ATCCGCCTGC GGCGAGGTCG ATCTCGGCGA AGCCGCGCGC
TTCTATCCCA GCGACGAGGC GCTCAAGCTC TGGCAGGTGG GCAGCCAGGG CAAGGCCCGG
CTGGTCTACA GCGAAGAACA GGCCTGA
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| Protein sequence | MSFVHLRTHT EYSVVDGTLR IDEIVKTAAK DGQPALAITD LANLFGAIKF YKEANKRGVK
PIIGADIWLE PEGIGAAGEV RPATRLLLLV QNEPGYLNLC EILSRAWVQN VQRNQAWVKW
EWLDELNGGL IALSGGLMGC VGQSLAQGDT VRAAELARKL AAIFPRRFYL EVQRAGLPGH
DALVLATVPL AAQLQLPVVA THPIQYLAPD DFDAHEARVC VAEGETIANP KRPRRFGRDQ
HFKTQAEMEA LFADVPTALA NTLEIARRCS LRLVLGKPQL PNFPTPTLAD GSSMPMEDYF
RQLSYEGLEE RLALLYPKPE KRDAERARYL ERLEFELTTI LKMGFPGYFL IVSDFIRWAK
ANGCPVGPGR GSGAGSLVAY VLSITDLDPL HYNLLFERFL NPERVSMPDF DIDFCQGNRD
RVIDYVKDRY GRPAVSQIAT FGTMAAKAAL RDIGRVLGMG YGHVDSIAKL IPAPPGKSVT
LARVPEKAED RDGGVIYARL EAPELEEREK NEEEVAELLS LAMRVEGMVR NIGMHAGGVL
IAPGKITDFC PLYQQPGSDS AVSQYDKDDV EAIGLVKFDF LGLATLTILE LAKEFIVARH
ENRKDFAFET IPLDDAAVYK LFSDGLTEAV FQFESGGMQR MLKDAKPSRL EDLIALNALY
RPGPMDLIPS FVARKHGKEP VEYPHPMVEW VLSETYGIMV YQEQVMQTAQ VLGGYSLGGA
DMLRRAMGKK KAEEMAEHRA IFRKGAAGNN ISQDKADEIF DLMEKFAGYG FNKSHAAAYS
LLAYHTAWIK VHHTAEFFAA NMTIELDDTD KLRVLRQDAL KFGVQFESPD VNVGVYRFEP
APGKAGNKLI RYGLGAIKGT GQGAIEAIIA ARNEGGPFRS IFDFCARVDR KSINKRVIEA
LVKAGAFDKL HPKGLDGRAE LLASVGLALE YAGTQAAHAD QSGLFDFGGG DDHGSSTREP
DYVAAETWDV KQRLSHEKIA IGYFLSGHLF DQVAAEVRQF AKRRIEDLSD SRDPQTLAGI
VTDLRIVNGH RGKVAIFKLD DKTAAIEAVV AEELLNANAA LLKDDELLIL QGKAQPDRFS
GGVRFNVIQI LDLPTARCRH GRYLRVPATD NLPPVDQVLR DFPARSISTE HGELVQGVPI
RLVVERESAC GEVDLGEAAR FYPSDEALKL WQVGSQGKAR LVYSEEQA
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