| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0964 |
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| Symbol | rpsA |
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| ID | 6161473 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1030689 |
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| End bp | 1032377 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641663715 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_001790001 |
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| Protein GI | 171057652 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 69 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATCCT TTGCCGCGAT GTTCGAAGAG TCGCTGCAGC GCTCTGACAT GCGCGCCGGC
GAGGTCATCT CGGCTGAAGT CGTGCGCGTC GAACACAGCT TCGTCGTCGT CAACGCCGGC
CTGAAGTCCG AGGCCTATGT GCCTCTCGAA GAATTCAAGA ACGACAAGGG CGAGCTCGAA
GTCCAGGTCG GCGATTTCGT TTCCGTCGCC ATCGACGCGA TCGAAAACGG GTACGGCGAC
ACCATCCTGT CGCGCGACAA GGCCAAGCGC CTGGCTTCGT GGCTGTCGCT CGAGAACTCG
CTGGAATCGG GCGAGTTCGT CACCGGCACC GTGTCGGGCA AGGTCAAGGG CGGCCTGACC
GTGCTGGTCA ACGGCATCCG CGCCTTCCTG CCGGGTTCGC TGCTCGACAC GCGTCCGGTC
AAGGACATGA GCCCGTACGA GGGCAAGACC ATGGAGTTCA AGGTCATCAA GCTCGACCGC
AAGCGCAACA ACGTCGTGCT GTCGCGCCGT GCCGTGGTTG AAGCTTCGAT GGGCGAAGAG
CGCGCCAAGC TGCTCGAGAC GCTGCGCGAA GGTGCCTTCG TCAACGGCGT GGTCAAGAAC
ATCACCGAAT ACGGTGCGTT CGTGGATCTG GGCGGCATCG ACGGCCTGCT GCACATCACC
GACATGGCAT GGCGCCGCGT GCGTCACCCG AGCGAAGTGG TGACGGTCGG TCAGGAACTG
ACCGCCAAGG TCCTGAAGTT CGACGCCGAG AAGAACCGCG TCTCGCTGGG CCTCAAGCAG
ATGGGCGACG ACCCGTGGAT CGGCGTCTCG CGCCGCTACC CGTCGGGCAC CCGCATCTTC
GGCAAGGTCA CCAACATCGC CGACTACGGT GCATTCGTCG AGATCGAACC GGGCATCGAA
GGCCTGGTGC ACGTCTCCGA AATGGACTGG ACCAACAAGA ACGTGGCTCC GTCGAAGATC
GTCGCCCTGG GTGACGAAGT CGAAGTCATG GTGCTCGAGA TCGACGAGGA CAAGCGCCGC
ATCTCGCTGG GCATGAAGCA GTGCAAGCAG AACCCGTGGG ACGAGTTCGC GCAGAACTTC
AAGCGCGGCG ACCGCGTCAA GGGCCCCGTC AAGTCGATCA CCGACTTCGG CGTGTTCGTC
GGTCTGGCTG CCGGCATCGA CGGCCTGGTG CACCTGTCCG ACCTGAGCTG GAACGAGACC
GGCGAAGCGG CCGTGCGCAA CTTCAAGAAG GGCCAGGACG TCGAGGCGAT CGTCCTGGGC
ATCGACGTCG AGCGCGAGCG CATCTCGCTG GGCATCAAGC AGCTCGACAC CGACCCGTTC
ACCAACTACA CCACGCTCAA CGACCGTGGC GCGACGGTGA CCGGCAAGGT CAAGACGGTG
GACGCCCGTG GCGCTGAAAT CCAGCTCAAC GAAGAAGTCA CCGGCTACCT GCGCGCTTCC
GAAATCGCCC GCGAGCGTGT CGAAGACGCC CGCAACGTGC TCAAGGAAGG CGACGAAGTC
ACGACCATGA TCATCAACGT CGACCGCAAG CTGCGTTCGA TCCAGTTGTC GATCAAGGCC
AAGGACAGCG TCGAGCAGCA GGAAGCCATG CAGCGCCTGT CGGCCGACAA CCGCGAAACG
GTCGGCAATG CCGGTACCAC CAGCCTGGGC GCCCTGCTCA AGGCCAAGCT GGACCAAGGC
AACAACTGA
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| Protein sequence | MESFAAMFEE SLQRSDMRAG EVISAEVVRV EHSFVVVNAG LKSEAYVPLE EFKNDKGELE
VQVGDFVSVA IDAIENGYGD TILSRDKAKR LASWLSLENS LESGEFVTGT VSGKVKGGLT
VLVNGIRAFL PGSLLDTRPV KDMSPYEGKT MEFKVIKLDR KRNNVVLSRR AVVEASMGEE
RAKLLETLRE GAFVNGVVKN ITEYGAFVDL GGIDGLLHIT DMAWRRVRHP SEVVTVGQEL
TAKVLKFDAE KNRVSLGLKQ MGDDPWIGVS RRYPSGTRIF GKVTNIADYG AFVEIEPGIE
GLVHVSEMDW TNKNVAPSKI VALGDEVEVM VLEIDEDKRR ISLGMKQCKQ NPWDEFAQNF
KRGDRVKGPV KSITDFGVFV GLAAGIDGLV HLSDLSWNET GEAAVRNFKK GQDVEAIVLG
IDVERERISL GIKQLDTDPF TNYTTLNDRG ATVTGKVKTV DARGAEIQLN EEVTGYLRAS
EIARERVEDA RNVLKEGDEV TTMIINVDRK LRSIQLSIKA KDSVEQQEAM QRLSADNRET
VGNAGTTSLG ALLKAKLDQG NN
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