Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0946 |
Symbol | |
ID | 6160160 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 1008066 |
End bp | 1009643 |
Gene Length | 1578 bp |
Protein Length | 525 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641663697 |
Product | alkaline phosphatase |
Protein accession | YP_001789983 |
Protein GI | 171057634 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3540] Phosphodiesterase/alkaline phosphatase D |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 114 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCTGATCT CTCGTCGCGA TGCGGTCCGC CGCCTATCGG GCACCGCGCT GCTGCTCGCG GCGGGACGCC TTCGGTCGTC CGAAAGCCCG TCGCAGATGC GGCTGCCTTC GACCCCTCCC CGATTCGATC GCTATCCGTT CACGCTCGGG ATCGCGAGCG GCCAGCCGCG GCCCGACAGC GTCGTGCTGT GGACCCGGCT CGCCCCCGAA CCGCATGCCG ATGGCGGCGG CATGGACCCG CTGCCGCTCC CGCTGCGGTG GGAAATGGCG CACGACGAGG CCTTCACCCA GCCGGTGCGC ACCGGTGAGG TGGTGGCGTT GCCGAGCCTG GCGCACAGCG TGCGGGTCCA GGTGGATCGG CTGCCGCCGG GGCGGGTCTT CCACTACCGT TTCATCACCG GCAACGCGGT GAGCCCGATC GGACGCACAC GCACCGCACC ACCGGCCGAC AGCCAGCCGG CGCGGCTGCG CCTGGCGCTG GCGTCGTGCC AGCACTACGA ACAAGGCCGC TTCACGGTGC ACCGCGAGAT CGCGGCCAGC GACCTCGATC TGGTGCTGTT CGTGGGCGAC TATGTCTACG ACTCCAGCAA CCCGAGCTTT CTGCGCAGGC CGCATGAAGG GCCTGCGCCT GAAACGCTGG ACCAGTTTCG GGCCCGCCAC GCCACCTACA AACTCGACCA CGACCTGCAG GCGGCCCATG CGGCGCACCC GTGGATCCTG GCCTGGGACG ACCACGAGGT GCGCAACGAC TATGCCGCCG CGCTGGGTAC CGGCGAGTTG TCGGCGGCCG AGTTCGTGAG CATCCGCGCG GCGGCCTACC AGGCCTACTT CGAGCACCTG CCGCTCGCGC TCGATCAGTT CCCGGGCGAA CGGGGCATGC GCATGCACGA CCGCTACACG TGGGGCCGAC TGGCCGAGCT GTGGACGCTC GACGGCCGCC AGCACCGCAG CGTGCAAGCC TGCAACGCGG CGGACGAATC GGGCGGGCAT CTGCGCTGGC ATTGCGACGA ACTGGCAGAC CGGCACCGAA CGATGCTCGG CCCCGCGCAG GAAAACTGGC TGCACCGAGG GCTCGCACAC AGCCAGCGGC GCTGGAAACT GATCGGCCAG GCCACGCAGA TGAGCGCCTC TGGGCTCGAG ACGCTGGGCC GGCAACTGGT GCACACCGAC GGCTGGGACG GCTATGCGTC ATCGCGCGCA CGGCTGCTGC AGCACCTGGT CGACAGCGGC GTGCAGGACG TCGTCGCACT CGGCGGCGAC GTGCACCGGC ATGTGGCGGC CAACCTGCGT GTCAGGCCCA ACGACGAACG TTCCGCGGTG GTGGCCAGCG AGTTCGTCAC CACCTCGCTC ACGACCCGCG GCATCCCGGA AAGCTGGATG TCGCTGATAC GAAGCAGCAA CCCGGACATC CTGCACGGGC GCAGTGACGA GAGGGGTTAT GCCCTGATCG AGCTTGGAAA CCAATCGCTA CACTTGACTG CGAGAGCCAC GGGGTTTCCG GTTACAGAAT CATCGCTTCT GCATACGCAA GCCAGTTACA GCGTTGAATC AGGTCGAGCC GGTCCTCGAC CCGCGTGA
|
Protein sequence | MLISRRDAVR RLSGTALLLA AGRLRSSESP SQMRLPSTPP RFDRYPFTLG IASGQPRPDS VVLWTRLAPE PHADGGGMDP LPLPLRWEMA HDEAFTQPVR TGEVVALPSL AHSVRVQVDR LPPGRVFHYR FITGNAVSPI GRTRTAPPAD SQPARLRLAL ASCQHYEQGR FTVHREIAAS DLDLVLFVGD YVYDSSNPSF LRRPHEGPAP ETLDQFRARH ATYKLDHDLQ AAHAAHPWIL AWDDHEVRND YAAALGTGEL SAAEFVSIRA AAYQAYFEHL PLALDQFPGE RGMRMHDRYT WGRLAELWTL DGRQHRSVQA CNAADESGGH LRWHCDELAD RHRTMLGPAQ ENWLHRGLAH SQRRWKLIGQ ATQMSASGLE TLGRQLVHTD GWDGYASSRA RLLQHLVDSG VQDVVALGGD VHRHVAANLR VRPNDERSAV VASEFVTTSL TTRGIPESWM SLIRSSNPDI LHGRSDERGY ALIELGNQSL HLTARATGFP VTESSLLHTQ ASYSVESGRA GPRPA
|
| |