| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0932 |
|---|
| Symbol | |
|---|
| ID | 6159777 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 996152 |
|---|
| End bp | 996934 |
|---|
| Gene Length | 783 bp |
|---|
| Protein Length | 260 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641663682 |
|---|
| Product | cytochrome c1 |
|---|
| Protein accession | YP_001789969 |
|---|
| Protein GI | 171057620 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2857] Cytochrome c1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 127 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGC GTTTCGCCTC CCTGATTGCC GGGCTTGCTG CCTGTTTCGT GCTGGCCGTG
CCGGTGGCCC AAGCGGCGTC CGGTGGCATG CCTCTGGACC GGTTCCCGGA AGAGAAGCTG
CAGGACACCG CTGCCCTCCA GCGTGGTGCC AAGCTGTTCG TCAACTACTG CCTCAACTGC
CACTCGGCCG CCTTCATGCG CTACAACCGC ATGCAGGACA TCGGTCTGAC CGTCGAGCAG
ATCAAGACCA ACCTGATGTT CGCCACCGAC AAGGTCGGCG ACACCATGAA GGTCTCGCTC
GATCCCCGGC AGGCCAAGGA CTGGTTCGGC GCCACGCCGC CCGACCTGAC CGTTGTGGCG
CGCTCGCGTG CCGGCCTGGG TGGTTCGGGC GCAGATTATC TGTACACCTA CCTGCGCACC
TACTACCGCG ACGACACCAA GGCGACCGGC TGGAACAACC TGGTGTTCCC CAGCGTGGGC
ATGCCTCACG CCCTGTGGGA GCTGCAGGGT GAACGTCGCG CGGTCTACGA AGAGCACGCC
GATGCGCACG ACGCCAGCAA GGTGACGCAC GTGTTCAAGG GTTTCGAGCA GATCAAGCCC
GGCCAGATGA CTGCTGCCGA ATACGACAGC GCAGTCGGTG ATCTGGTTGC CTACCTGCAA
TGGATGGGTG AGCCTGCACA GGGCTACCGG GTCAAGCTCG GTGCCTGGGT GCTCCTGTTC
CTGTCGATCT TCACGCTGTT CGCCTGGCGC TTGAACGCGG CGTACTGGAA AGACGTGAAG
TGA
|
|---|
| Protein sequence | MKKRFASLIA GLAACFVLAV PVAQAASGGM PLDRFPEEKL QDTAALQRGA KLFVNYCLNC
HSAAFMRYNR MQDIGLTVEQ IKTNLMFATD KVGDTMKVSL DPRQAKDWFG ATPPDLTVVA
RSRAGLGGSG ADYLYTYLRT YYRDDTKATG WNNLVFPSVG MPHALWELQG ERRAVYEEHA
DAHDASKVTH VFKGFEQIKP GQMTAAEYDS AVGDLVAYLQ WMGEPAQGYR VKLGAWVLLF
LSIFTLFAWR LNAAYWKDVK
|
|---|
| |