Gene Lcho_0917 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0917 
Symbol 
ID6160249 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp981754 
End bp983124 
Gene Length1371 bp 
Protein Length456 aa 
Translation table11 
GC content71% 
IMG OID641663667 
ProductDNA repair protein RadA 
Protein accessionYP_001789954 
Protein GI171057605 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1066] Predicted ATP-dependent serine protease 
TIGRFAM ID[TIGR00416] DNA repair protein RadA 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones84 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCACGCG ACAACAAGAC GATCTACACC TGCCGCGAAT GCGGCGGCAC CAGCGCCAAG 
TGGCTGGGCA AATGCCCGCA CTGCAACGCC TGGAACACGC TCGAAGAAGG TGTCGCCGAG
CCGGCCGCCG GCACCGCCAA GAACCGCTTC CAGGGCCTGA CGCGCAGCCA GCCCGTCGCC
ACGCTGGGCG ACATCCAGGC GGCCGAGGTC TCGCGCACGC CCACCGGGCT GGAAGAACTC
GACCGCGTGC TCGGCGGTGG CATCGTCGAA GGTGGCGTGG TGCTGATCGG CGGCGACCCC
GGCATCGGCA AGAGCACGCT GCTGCTGCAG GCGGCCGAGG CGCTGTCGGC GCAGATGAAG
GTGCTGTACG TGACCGGCGA GGAGTCCGCC GCCCAGCTCG CGCTGCGCGC CCACCGGCTC
GGCCTGAGCG GGAAAAACCT GCGCGTGCTG GCCGAGATCG GGCTCGAGAA GATCCTCGCC
ACGCTCGAGG CCGAGCAGCC GGCCTTCTGC GTCATCGACT CGATCCAGAC GCTCTACTCC
GACCAGCTCA GCGCCGCGCC CGGCTCGGTG TCGCAGGTGC GCGAGTGCGC CTCGCACCTC
ACGCGCAGCG CCAAGGCGAG CGGCTGCACC GTCGTGCTGG TCGGCCACGT GACCAAGGAA
GGCGCCATCG CCGGCCCGCG CGTGCTCGAA CACATCGTCG ACACGGTGCT GTATTTCGAG
GGCGACACGC ACAGCAGCTT CCGCCTGGTG CGCGCGATCA AGAACCGCTT CGGCGCGGTC
AACGAGATCG GCGTGTTCGC GATGACCGAA CGTGGCCTCA AGGGCGTGGC CAACCCGAGC
GCGATCTTCC TGTCGACCCA CGGCGAGCCG GTGCCGGGCG CCTGCGTGCT GGTGACGCTC
GAAGGCACGC GGCCGATGCT GGTCGAGATC CAGGCGCTGG TCGACAACGG CGGCCCGAGC
CCGCGCCGGC TGAGCGTCGG CCTGGATCGC GACCGGCTGG CGATGCTGCT GGCGGTGCTG
CACCGCCATG CCGGCGTGGC CTGCGCGGAT CAGGACGTGT TCGTCAACGC GGTCGGCGGC
GTGCGCATCA GCGAGCCGGC GGCCGACCTG GCGGTGCTGC TGGCGATCCA GAGCTCGCTG
CGCGGGCGGG CCCTGCCGCG CGGATTCATC GCCTTCGGCG AGGTCGGTCT GGCCGGCGAG
GTGCGGCCCG CGCCGCGCGG CCAGGAGCGG CTGAAAGAGG CGGCCAAGCT CGGCTTTTCG
GTCGCGGTGG TGCCCAAGGC GAACGCGCCG AAGAAGCCGA TCGAGGGCCT GACGGTGCAT
GCGGTCGAGC GCATCGAGGA GGCGATCTCG CTGACCCGCT CGCTGACCTG A
 
Protein sequence
MARDNKTIYT CRECGGTSAK WLGKCPHCNA WNTLEEGVAE PAAGTAKNRF QGLTRSQPVA 
TLGDIQAAEV SRTPTGLEEL DRVLGGGIVE GGVVLIGGDP GIGKSTLLLQ AAEALSAQMK
VLYVTGEESA AQLALRAHRL GLSGKNLRVL AEIGLEKILA TLEAEQPAFC VIDSIQTLYS
DQLSAAPGSV SQVRECASHL TRSAKASGCT VVLVGHVTKE GAIAGPRVLE HIVDTVLYFE
GDTHSSFRLV RAIKNRFGAV NEIGVFAMTE RGLKGVANPS AIFLSTHGEP VPGACVLVTL
EGTRPMLVEI QALVDNGGPS PRRLSVGLDR DRLAMLLAVL HRHAGVACAD QDVFVNAVGG
VRISEPAADL AVLLAIQSSL RGRALPRGFI AFGEVGLAGE VRPAPRGQER LKEAAKLGFS
VAVVPKANAP KKPIEGLTVH AVERIEEAIS LTRSLT