Gene Lcho_0906 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0906 
Symbol 
ID6162101 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp970066 
End bp971274 
Gene Length1209 bp 
Protein Length402 aa 
Translation table11 
GC content69% 
IMG OID641663656 
Productacetylornithine aminotransferase 
Protein accessionYP_001789943 
Protein GI171057594 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4992] Ornithine/acetylornithine aminotransferase 
TIGRFAM ID[TIGR00707] acetylornithine and succinylornithine aminotransferases 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones57 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGCCG CCCCGACGTC CCTCGAACCG CATGTGATGA AGACCTACGG TCGCCTGCCG 
ATCGCCATGT CGCACGGCCG AGGCTGCCGA GTCTGGGACA CCGAAGGCCG CGAATACCTC
GATGGCCTGG GCGGCATCGC CGTCAACACG CTGGGCCACG CGCACCCCAA GCTGGTGCCG
GCGCTGCAGG AGCAGGTCGG CCGGCTGATG CACTGCTCGA ACTACTACCA CGTGCCCTTG
CAAGAGGCGC TGGCGGCCAA GCTGGTCGAT CTGTCCGGCC TGACCAACGC CTTCTTCTGC
AGCACCGGGC TGGAGGCCAA CGAGGCCGCG CTCAAGCTGG CGCGCAAGTT CGGCCACGAC
AAGGGCATCG AGCGCCCGGA AATCATCGTC TACGAGCGCG CCTTCCACGG CCGCTCGATC
GCCACGCTGT CGGCCACCGG CAACCCCAAG GTGCAGGCCG GTTTCGGCCC GCTGGTCGAG
GGCTTCGTGC GGGTGCCGCT GAACGATCTG GCGGCGGTCG AGGAAGTGGC GCGCACCAAC
CCGAACGTGG TGGCGGTGTT CCTGGAAACG ATTCAAGGCG AGGGCGGCAT CAACGCCTCG
CGCTGGGACT ACCTGCAGAG CCTGCGCCGC CTGTGCGACC AGCAGGACTG GCTGCTGATG
CTCGACGAGG TGCAGTGCGG CATCGGCCGC ACCGGCAAGT GGTTCGCGCA CCAGTGGGCC
GGCATCGTGC CCGACGTCAT GCCGCTGGCC AAGGGCCTCG GCTCGGGCGT GCCGATCGGC
GCGGTGGTCT GCGGGCCGAA GGCGGCGCAG ATCTTCCAGC CCGGCAACCA CGGCACCACC
TTCGGCGGCA ATCCGCTGTC GATGCGTGCG GGCGTCGAGA CGCTGCGCAT CATGGAAGAC
GAAGGCCTGC TGCAGAACGC CGCGCGTGTC GGCGGCATGC TGCGCGCCAG CCTGGAGCGC
GAGCTCGCCG ACGTGGCCGG CGTGGTCGAG ATCCGTGGCG CCGGCCTGAT GCTGGGCATC
GAACTCGACC GCCCGTGCGG CGAGATCCTG ACGCTGGCGA TGCAGGCCGG CCTGCTGCTG
AGCGTGACGG CCGACCGCGT CATCCGCCTG GTGCCGCCGC TGATCCTGAG CGAGGCCGAG
GCGGGCGAGA TCGTCGCCAT CCTGTGCCCG CTGATCAAGA ACTTCCTCGC CACGAGCCAG
CCGTCATGA
 
Protein sequence
MTAAPTSLEP HVMKTYGRLP IAMSHGRGCR VWDTEGREYL DGLGGIAVNT LGHAHPKLVP 
ALQEQVGRLM HCSNYYHVPL QEALAAKLVD LSGLTNAFFC STGLEANEAA LKLARKFGHD
KGIERPEIIV YERAFHGRSI ATLSATGNPK VQAGFGPLVE GFVRVPLNDL AAVEEVARTN
PNVVAVFLET IQGEGGINAS RWDYLQSLRR LCDQQDWLLM LDEVQCGIGR TGKWFAHQWA
GIVPDVMPLA KGLGSGVPIG AVVCGPKAAQ IFQPGNHGTT FGGNPLSMRA GVETLRIMED
EGLLQNAARV GGMLRASLER ELADVAGVVE IRGAGLMLGI ELDRPCGEIL TLAMQAGLLL
SVTADRVIRL VPPLILSEAE AGEIVAILCP LIKNFLATSQ PS