| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0902 |
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| Symbol | |
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| ID | 6162217 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 966145 |
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| End bp | 967674 |
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| Gene Length | 1530 bp |
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| Protein Length | 509 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641663652 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_001789939 |
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| Protein GI | 171057590 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4585] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATGCCG TATCGCCGCA GGATCAATCG TTCGACCTCT TCAGCGTGCC GCTGGGCGGC
ATCATCCGTG CCTCGCACGA GGCGATCGTG GTGATCGACG AACAGCAGGT CGTCGTCGCG
CTGAACCCGG CGGCGCAGGA GATGTTCGGC TGCACCGCCG AGCAGGCGCT CGGTTCCTCG
CTGGCGCGCT TCATCCCGGC CGCCTCGCGC TCGGCGCACG CGGCGCACGT GCACGAGTTC
GCTTCGTCCG GCGTGCTCGA ATGCCAGATG GCAAACCGCC GCCGCATCAC GGCCGTGCGT
GCCGACGGCG AGACCTTCCC GGTCGAGATC GCGCTGTCGC GGGTCGATTT CGGGGCCGAC
GGCCGAGCGC GCCGCTACTT TGCCGCGCTG CTGCGCGACC TCAGCCTGGA ACGCGAACTC
AAGGACGCGC TCGAGACGCT GCAGAAGCGC CTGCGCGCCG TGCTCGAACT GGCCCCGATC
GCGCTCTGGA TCGCCGATGC CGACCGGGTG GTGTTCGCCA ACCGTGCCGC GGCGCGCCTG
TTCGGCTGCG ATGCCGACCA GCCGCTGATC GGCCGATCGG TCTACGAGAT GCTGGAGCCC
CGCGCCCATG CGCACCTGCG CCAGCAGATG GCGCGCGTGC TCGCCGGCGA CAACGATGCC
GAGGTCGTGC GCGGCACCAT CGCGCGCGCC GACGGCAGCC GGCGCGAGAT CGAGATCGCC
CTGGCCGCCC TGCCCGACCA CGGCCGCACC ACCGTGCAGA TGGTGGTGGC CGACGTCACG
CAACGCCGCG ACGAGGCCAT CGAACTCGAG CGCTCGCGCC ATGCGCTGCG GCAGCTGTCG
GCCAGCGTGG TCGAGGCCCG CGAAGCCGAA CGGCGGCGCA TCGCCCGCGA GTTGCACGAC
GAACTCGGCC AGCGGCTGAC CGCGCTCAAG ATGGATCTGT CGGGCCTCGC CGCGGCCAAC
GGCCTGAAGG ACACCGACAA ACATCTCGCC GGCATGCTGA CGATGCTCGA CGAGACGGTG
GCCTCGGTGC GCCGCATCGC CGGCGACCTG CGCCCGCTGA TGCTCGACGA CCTGGGCCTG
AACGCCGCCA TCGAGTGGCT GGCGACCGAT GCCTCGCGGC GCCTGGGCAT CGAGATCGAG
GTGCAGCTCA CCGAAGACGA CTCGCAGGTC GACGAGCGGG TCGCCATCGC CGTCTACCGC
ATGGTGCAGG AGGCGCTCAC CAATGTGGCG CGCCACGCCA AGGCCAGCCG CGTCGAGATC
TGCCTGAAGC AGAAGGGCGA CGCCCTGGTG CTGACGGTGC AGGACGACGG CATCGGCTTT
CCGGCCCGCG CGCTGCAGCG CGAGGGCTCC TACGGCCTGC TGGGCATGCG CGAGCGCACC
CGCATGCTCG GCGGCCGTTT TGCGCTGGTC ACGGTGCCCG GCCAGGGCGG CTGCGTGGTC
GTGCACCTGC CGCTGACACC GGCCGACGAG ACCCGTGCCG AAGCCGGCCC GGATGACACG
GTGGCCGCCG AACGCGGGGA ACCGTCATGA
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| Protein sequence | MNAVSPQDQS FDLFSVPLGG IIRASHEAIV VIDEQQVVVA LNPAAQEMFG CTAEQALGSS
LARFIPAASR SAHAAHVHEF ASSGVLECQM ANRRRITAVR ADGETFPVEI ALSRVDFGAD
GRARRYFAAL LRDLSLEREL KDALETLQKR LRAVLELAPI ALWIADADRV VFANRAAARL
FGCDADQPLI GRSVYEMLEP RAHAHLRQQM ARVLAGDNDA EVVRGTIARA DGSRREIEIA
LAALPDHGRT TVQMVVADVT QRRDEAIELE RSRHALRQLS ASVVEAREAE RRRIARELHD
ELGQRLTALK MDLSGLAAAN GLKDTDKHLA GMLTMLDETV ASVRRIAGDL RPLMLDDLGL
NAAIEWLATD ASRRLGIEIE VQLTEDDSQV DERVAIAVYR MVQEALTNVA RHAKASRVEI
CLKQKGDALV LTVQDDGIGF PARALQREGS YGLLGMRERT RMLGGRFALV TVPGQGGCVV
VHLPLTPADE TRAEAGPDDT VAAERGEPS
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