| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0896 |
|---|
| Symbol | |
|---|
| ID | 6162360 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 960432 |
|---|
| End bp | 961652 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641663646 |
|---|
| Product | filamentation induced by cAMP protein Fic |
|---|
| Protein accession | YP_001789933 |
|---|
| Protein GI | 171057584 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3177] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTGCGC TGTACGACTC GGTTCACCAG TTCGAGCCCC TGATGCCGTC CGATGTGGCT
CAACAACCGC TGTTGGCCCA GGCACACGAT CTGGGTCGTG CGGCGCTGCA GTTGGCTGGC
ACGCCCGTGC CAGCGGGGCT GCGTGCATTG CTGCGAAGCA TGAATTCGTA CCACTCGAAC
CGTATCGAGG GTCAACACAC AAAACCGTTC GAGATCGAGC AGGCGCTGAG GCGGGACTTC
TCCGCCAATC GCGAACTGGC GACCCGGCAG AGACTCGCGG TGGCGCACAT CGAAGCCGAG
GTGGCGCTGG AGGCGCGCTA TGTCGGCATC GAAGGGGCGC TGCGCCTCTA CAGCGCGCAG
GCGATCGCTG ACCTGCACCA TGAACTGTTC GGCCGCCTGA CGCCCGAAGA CCTGAACGCG
GGCAACGCCG ACGAGATCAT TCCCGGGGCG CTGCGCACAC GCGACGTCAG CGTCGGTCAG
CACATCGCGC CGGCGTTCAC GGCGCTGCCC AAGTTTCTGC AACGCTGGGC CGACGTCTAC
GCCAACACGC GCCGCGGTGA AGCGGCGTTG GTGGCTCTGG CCGCCGCGCA CCATCGACTC
GGCTGGATCC ATCCCTTCGT CGATGGCAAT GGCCGCGTGA TGCGACTGCA CACCCACACC
ATGCTGAGCG CGCTGGGCTA CACCGGGGGG CTGTGGTCGC CCCTGCGTGG CTTCGCGCGC
AGCACCGACC GCTACTACGC GCTGCTGGCC GCCGCCGATG AAGCGCGCCG CGGCGACCTC
GACGGACGCG GGAACCTGAG CCAGCGTGCA CTGGTCGACT GGATCGGCTA CGTGCTCTCG
GTGTGCCAGG ACCAGGTCGC ATTCATGGCT GGAATGCTGA AACTCGGTGA CCTGGAGCGG
CGCGTGGCCG CCTGCTTGGC CTATGAGGAA CACACCCTGC GATCGGGCGT GCGCATGGCC
GCACTGCGGC CGCTGCACTA CCTGTTCGTC ACCGACATCG CCCTGGCTCG CGGAGAGTTC
AAGGCCATGA CCGGTCTGGC CGAGCGCACG GCAGGCTCAA TGCTGAAAGC CCTGCTCGAC
CGCGGCCTGC TGACCAGCGA AACCCCCCAG GGTCCGGTGC GCTTCGGCCT GCCCCTGCAT
GCGTTGCGCT TCTACTTTCC GACCCTTTGG CCCGAAGCCG AAGCAGACGA CGAACCCGAC
CGACGCAACG CAGGACATTG A
|
|---|
| Protein sequence | MVALYDSVHQ FEPLMPSDVA QQPLLAQAHD LGRAALQLAG TPVPAGLRAL LRSMNSYHSN
RIEGQHTKPF EIEQALRRDF SANRELATRQ RLAVAHIEAE VALEARYVGI EGALRLYSAQ
AIADLHHELF GRLTPEDLNA GNADEIIPGA LRTRDVSVGQ HIAPAFTALP KFLQRWADVY
ANTRRGEAAL VALAAAHHRL GWIHPFVDGN GRVMRLHTHT MLSALGYTGG LWSPLRGFAR
STDRYYALLA AADEARRGDL DGRGNLSQRA LVDWIGYVLS VCQDQVAFMA GMLKLGDLER
RVAACLAYEE HTLRSGVRMA ALRPLHYLFV TDIALARGEF KAMTGLAERT AGSMLKALLD
RGLLTSETPQ GPVRFGLPLH ALRFYFPTLW PEAEADDEPD RRNAGH
|
|---|
| |