| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0894 |
|---|
| Symbol | |
|---|
| ID | 6162358 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 957669 |
|---|
| End bp | 959072 |
|---|
| Gene Length | 1404 bp |
|---|
| Protein Length | 467 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641663644 |
|---|
| Product | mannitol dehydrogenase domain-containing protein |
|---|
| Protein accession | YP_001789931 |
|---|
| Protein GI | 171057582 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0246] Mannitol-1-phosphate/altronate dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGTCA TCCTCCACCT CGGCCTGGGC TCCTTCCACC GCGCCCACCA GGCCGTCTAT
CTGCAGGCAC TGCACGAGCG CGGCGACATG CGCTGGGTGC TGGCCGGCGG CCACATTCGC
CCGGACATGG CGGAGACCAT TGCGGCACTG CAGGCCAGCG GCGGGGCCTA CACGCTGGAG
ACCATCTCGC CGCAGGGCGA GCACGCATAC CAGCGAATCA CATCGATCCA GCGGGTCATC
GGCTACACGC CCGACCTGGC CGGGCTGTTG GCAGCGGGCG CGGACCCGGC CACGAAGATC
ATATCGTTCA CGGTGACGGA GGCGGGCTAC TACCTCGACG CGAAGAACCA GCTGGATCTG
GCCACCTTCG CCGATCTGCG TGCCGACCTC GACGCGCTGC GCAGCGGAGC ACCGGCCGAC
AGATCGCGCG CCTGGACCAT CTACGGCGCG CTGACCGCCG TGCTGCGCGC CCGCAAGGAC
GCGGGCGCCG GCCCGGTCAC GTTGATGAAC TGCGACAACC TGCGCCACAA CGGCGAGCGC
TCGCGCAGCG GCCTGCTGCA GTACATCGCG CAACTCGGTG ACGGCGAACT CGCGGTCTGG
GTCGAGTCCC ACACGACCAG CCCGAACGCG ATGGTCGATC GCATCACGCC ACGGCCGACA
CCGGCGGTGC GCGAACGCGT GTTCGCTGCC ACCGGCATCG ACGACCCGGC CGCGCTGATG
GGCGAGAGCT TCATCCAATG GGTCATCGAG GATCACTTCA TTGCCGGTCG CCCGACCTGG
GAAAACGTCG GCGGCGAGAT GGTGCAGTCG GTGCAGGCCT ACGAAGAAGC CAAGATCCGC
CTGCTCAACG CGCCGCACAG CTGCATCGCC TGGGCGGGTA CGCTGGTTGG CTACACCTAC
ATCCACGAGG GCACGCTGGA CCCGGTGATC CACCAGTTCG CCTACGACTA CGTCACCGAC
GACGTGATCC CGGTGCTCAG TCCGAGCCCA CTGGACCTCG CCACCTACCG TGACGTGGTG
CTCGACCGCT TCGCCAACAC CGCGATTGCC GATACCAATC AACGCGTCGC GATGGACGGC
TTCAGCAAGA TTCCCGGCTT CATCGCGCCG ACGTTCCGCG AGCGCCTTGC GCGCAATGAG
TCCATCGACA GCGTGGCGAT GCTGCCGGCG CTGTTCCTCG CCTATCTGCA GGTATGGCAC
CGCGGCGGCA TCGCCTACAC CTACCAGGAC CAGGCGATGG ACCCCGCTGT GGCGCACGCC
ATCTGCGACG CGGTCGATCC GGTCGCGGCC TTCTGCGCCG ACCTGCCGCT GTGGGGAAAT
CTGGCCGGCG ATGCGCGGCT GGTCGATGCC GTGCGGGCAG CCAGCGCCAG GGTCGAACGC
TTCATCCACG CCACGCGGCG TTGA
|
|---|
| Protein sequence | MNVILHLGLG SFHRAHQAVY LQALHERGDM RWVLAGGHIR PDMAETIAAL QASGGAYTLE
TISPQGEHAY QRITSIQRVI GYTPDLAGLL AAGADPATKI ISFTVTEAGY YLDAKNQLDL
ATFADLRADL DALRSGAPAD RSRAWTIYGA LTAVLRARKD AGAGPVTLMN CDNLRHNGER
SRSGLLQYIA QLGDGELAVW VESHTTSPNA MVDRITPRPT PAVRERVFAA TGIDDPAALM
GESFIQWVIE DHFIAGRPTW ENVGGEMVQS VQAYEEAKIR LLNAPHSCIA WAGTLVGYTY
IHEGTLDPVI HQFAYDYVTD DVIPVLSPSP LDLATYRDVV LDRFANTAIA DTNQRVAMDG
FSKIPGFIAP TFRERLARNE SIDSVAMLPA LFLAYLQVWH RGGIAYTYQD QAMDPAVAHA
ICDAVDPVAA FCADLPLWGN LAGDARLVDA VRAASARVER FIHATRR
|
|---|
| |