| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0883 |
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| Symbol | |
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| ID | 6163195 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 945558 |
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| End bp | 946538 |
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| Gene Length | 981 bp |
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| Protein Length | 326 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641663633 |
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| Product | integrase catalytic region |
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| Protein accession | YP_001789920 |
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| Protein GI | 171057571 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG2826] Transposase and inactivated derivatives, IS30 family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCTGG CGAGCATGAA ACAGCAGGGG TGCAGCATTC GCGCCATGGC GCGTGCGCTG
GGGCGGCCGG CGAGCACGGT CAGTCGCGAA CTGCGCCGCA ACGTCAGCAC TGCGGGCGGG
TATGCGAGTG TGCCCGCGCA ATCGATGCGC ACCGCGCGCC GCCAGGCCAG TCGACCGATG
GCCAAACTCG ATCCGCGCAG TGTGATGTGG AGCGTCGTGC AGATCCTGCT GGGCTGGAAG
TGGTCGCCCC AGCAGATCGC CGCTACGCTC GAGCGCGTGT TCCCCCAAGA GCCCGAACGT
CGCGTGTCCC ACGAAACCAT CTACACGGCC ATCTACGCGC AACCCCGCGG TGAGTTGCGT
CGCCAACTCA TCGCCTGCCT GCGCCAGGGC CACAGTACAC GCCTGCCACG CACGCGGGGC
CAGGATCGGC GCGGCCAGAT CCCCGAGATG GTGAGCATCC ACGTGCGTCC GCCTGAGGTC
GAGGATCGAC TCCTGCCCGG TCACTGGGAG GGCGACCTCA TCAAGGGCGC GGGCAATCAG
TCCTCGGTGG GCGTGCTCGT AGAGCGCACC AGCCGTCTGG TCTTGCTGGC CAAGATGGAC
GATGCGACGG CCGCTTCAGC GCTGGCGGGC TTTGCTGCCA AGCTCAATTC GATCACCGCG
CCGATGCGCC AGAGTCTGAC CTACGACCAG GGCCGGGAGA TGAGCCGCCA CCAGGCGTTG
GCCGCCGCGA CCGGCGTGAA GGTCTACTTC TGTGATCCGC ACAGCCCCTG GCAGCGCGGC
ACCTGCGAGA ACACCAACGG GCTGCTGCGC CAGTACCTGC CCAAGGGCAC CGATCTGTCG
GTCCATACGC AGGATGCGCT TGATGCCATT GCTGACAGCC TCAACAACCG GCCCCGCGCG
ACGCACAACT TCCATTCGCC CCTGGAGGTA TTCGCAGCCG TGTTGAAAAA GCTCGATCAA
CCCGATTCTT CTATTCATTG A
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| Protein sequence | MTLASMKQQG CSIRAMARAL GRPASTVSRE LRRNVSTAGG YASVPAQSMR TARRQASRPM
AKLDPRSVMW SVVQILLGWK WSPQQIAATL ERVFPQEPER RVSHETIYTA IYAQPRGELR
RQLIACLRQG HSTRLPRTRG QDRRGQIPEM VSIHVRPPEV EDRLLPGHWE GDLIKGAGNQ
SSVGVLVERT SRLVLLAKMD DATAASALAG FAAKLNSITA PMRQSLTYDQ GREMSRHQAL
AAATGVKVYF CDPHSPWQRG TCENTNGLLR QYLPKGTDLS VHTQDALDAI ADSLNNRPRA
THNFHSPLEV FAAVLKKLDQ PDSSIH
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