| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0870 |
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| Symbol | |
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| ID | 6163590 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 934655 |
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| End bp | 937147 |
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| Gene Length | 2493 bp |
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| Protein Length | 830 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641663620 |
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| Product | type IV secretion/conjugal transfer ATPase |
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| Protein accession | YP_001789907 |
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| Protein GI | 171057558 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTGGCA TGTCTAGGAA GGTCGGGAAG GTCGGCACAG CCGACCTGTC AGGCCAGATG
GCGCTGCAGC CCCACTACTG GGCCCAGGCT CATCGCGAGA ACCCGCTCGC GCGCTTCGTG
CCCTTCTCTT CGCTGGTCAG CCCGCACGAC GTCATCTCGC GCGGCGGCGA TTACCTGCGG
GTCTGGCGCC TGGACGGCGT GCCCTTCGAG TGCGCCGACG AGCACCTGAT CGCCGAACGC
CATGAGGCCC TGTGCAGCCT GCTGCGCAGC CTGGCCGGCG GCCAGTGGGC GGTCTGGACG
CACCGGCTGC ATCGGCGCAC CCACGATGCG CTCACAGATC CGCGCGAGCC GGGTTTTGCG
CGCGAGCTGT CGCAGGCTTA CCAACGCCGG CTGGCCAGCC AGCCGATGAT GAGCAACGAG
CTCTACCTGA CGCTGGTCTA TCGGCCGAAC GTGTCGCGCA TCAGCCGGGC GCTGCAGTCG
AAGCACCGTT CCCGCCAGGC GATTGCCGAG GCTCAGGCCG AGGCCCTGCG GGTGATGGAA
GAACGCAGCG CGCTGGTCGA CCGCGTGCTG CGCGGCTTCG GACCGCAGCT GCTGGGTGTG
CGCGAAGACC GCGACCAGCG CTGGTCCGAG GTGGCCGAGT TCCTGTCCTA CCTGGTCAAC
GGCCGCTCGC GCCCGATCCC GGCCAGGACA GGGCCGCTGT ACCGCGTGCT GCCCACCACC
CGCCTGAGCT TCGGTGGCGA CAAGCTGGAG CTGCGCCACG GCGATCAGCG TCGGTATGCC
GCGCTGGTCG ACATCAAGGA ATACGCCGAC GCGGTCGAGC CCGGCATCCT CGACACCCTG
CTCTACGAGG CCAGCGAGTT CATCGAGACG CAGAGCTTCT CGATCCTGCC GCGCAGGGAC
GCGATGCGGG CCTTGGAGCT GCAGCGCGAC CAGCTGATCG CCAGCGACGA CGTGGTCAGC
AGCCAGGTCG CCGAGATGGA CGTGGCGCTC AACGAACTCG GCGACGGCCA GTTCTGCATG
GGTGAGTACC ACTACAGCCT GGTGGTGTTC GGCGACGACG TGGCCGACGC CGGCCGGCGC
GCGTCACAGG CCATCGGCGC GGTCGGCGAG GCGTCGAGCC TGCAGATGGC CCCGGTCGAC
CTGGTCGCCG ACGCGGCCTG GTTCGCGCAG ATGCCGGGCA ACTGGTCGTG GCGTCCACGC
GATGCCAAGC TGTCCTCGCG CGCCTTCGCG GCGCTGGCCT GTGGCCACAA CTTCCCGCGT
GGCAAGCGCG ACGGCAACCC CTGGGGCGAG GCCCTGGCCC TGCTGCGAAC GCCGTCTGGC
CAGCCCTTCT ACCTGAACCT GCACAGCAGC CCGGAGGGCG AGGATTCGGC CGACAAGAAG
CTGCCGGGCA ACACCCTCAT CATCGGCTCG ACCGGCGTCG GCAAGACCAC GCTGGAGATG
TTCCTGCTGG TGCTGACGCG CAAGTGGCAG CCCGCGCCCC GGCTGGTGCT GTTCGACCTG
GACCGTGGCT GCGAGATCGC GGTGCGCGCG CTCGGCGGCG AGTACCTGGC CTTCGAGGCC
GGCCGGCCCA CCGGCTGCAA CCCGCTGCAG CGCGAGCCGA CGCCCGAGCG GCTGCAGTTC
TGGGAGCAGC TGATCCGCAC CTGCGTGGCC ACCACGGCCC TGCCGCTGCT GCCGTCCGAC
GAGCGTGCCA TCGCCGATGC GGTGCGGGCG GTGGCGATGA TGCCGGCCCA CCTGCGGCGC
TTCTCGACCG TGCGCCAGAA CCTGCCCAAG ACCGGCGAGA ACAGCTTGTA CGAGCGCCTG
GGGCGCTGGT GCGATGGCGG CGCGCTGGGC TGGGTGTTCG ATCAGGCGCC GGATCAGCTC
GGACTGCTGT CGGCCACCCG CGTGGTGGGC TTCGACACCA CCGAGTTCCT GGACCTGCCC
GAGGTGCGCA CGCCGGTGAT GATGGTGCTG CTGCAGATGA TGGACGAGTG GGTGAACGGC
GAGCGCCTGA TCTACGTGAT CTCGGAGTTC TGGAAGGCGC TGGACCACGC GGTCTTCAGC
GACTTCGCCA AGCAGAAGCA GAAGACCATC CGCAAGCAGA ACGGGCTGGG CATCTTCGAC
ACCCAGAGCC CGTCGGACGT GCTGCGCCAC CCGATCGGTC GGACCATGAT CGAGCAGAGC
GTCACCAAGA TCTTCCTGGC CAACCCGGAG GCGGTGCACG ACGAGTACGT CGACGGCTTC
GGGCTCAGCG AGGCAGAGTA CGAGACGGTG CGCAGCCTGA GTGCCCAGGG TGGCCGGCGC
TTCCTGGTCA AGCAGGGAGC CACCAGCGCG ATCTGCGAGC TGGACCTGTC GGGGCTGGAA
GACTTCATCA CCGTGCTGTC GGCCACCACC GACAACGTCG CGCTGCTCGA CGAGCTGCGC
AGCCAGGTCA GCCACGATCC GAAGGCCTGG ATTCCGCTGC TGCAGCGCGC CGTGCGGGCG
CGCAAGGCGC GTGCGGCCGG GAGTCAGTCA TGA
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| Protein sequence | MLGMSRKVGK VGTADLSGQM ALQPHYWAQA HRENPLARFV PFSSLVSPHD VISRGGDYLR
VWRLDGVPFE CADEHLIAER HEALCSLLRS LAGGQWAVWT HRLHRRTHDA LTDPREPGFA
RELSQAYQRR LASQPMMSNE LYLTLVYRPN VSRISRALQS KHRSRQAIAE AQAEALRVME
ERSALVDRVL RGFGPQLLGV REDRDQRWSE VAEFLSYLVN GRSRPIPART GPLYRVLPTT
RLSFGGDKLE LRHGDQRRYA ALVDIKEYAD AVEPGILDTL LYEASEFIET QSFSILPRRD
AMRALELQRD QLIASDDVVS SQVAEMDVAL NELGDGQFCM GEYHYSLVVF GDDVADAGRR
ASQAIGAVGE ASSLQMAPVD LVADAAWFAQ MPGNWSWRPR DAKLSSRAFA ALACGHNFPR
GKRDGNPWGE ALALLRTPSG QPFYLNLHSS PEGEDSADKK LPGNTLIIGS TGVGKTTLEM
FLLVLTRKWQ PAPRLVLFDL DRGCEIAVRA LGGEYLAFEA GRPTGCNPLQ REPTPERLQF
WEQLIRTCVA TTALPLLPSD ERAIADAVRA VAMMPAHLRR FSTVRQNLPK TGENSLYERL
GRWCDGGALG WVFDQAPDQL GLLSATRVVG FDTTEFLDLP EVRTPVMMVL LQMMDEWVNG
ERLIYVISEF WKALDHAVFS DFAKQKQKTI RKQNGLGIFD TQSPSDVLRH PIGRTMIEQS
VTKIFLANPE AVHDEYVDGF GLSEAEYETV RSLSAQGGRR FLVKQGATSA ICELDLSGLE
DFITVLSATT DNVALLDELR SQVSHDPKAW IPLLQRAVRA RKARAAGSQS
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