Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0866 |
Symbol | |
ID | 6161703 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 931497 |
End bp | 932369 |
Gene Length | 873 bp |
Protein Length | 290 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641663616 |
Product | VirB8 family protein |
Protein accession | YP_001789903 |
Protein GI | 171057554 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3736] Type IV secretory pathway, component VirB8 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTCGGA CCACGAATGA CGTCAGGGAC GACTTCTTCG ACAGCGACTG GCAGGCCCTG CGTCAGTCGG ATCTGGCGCG CGATCCGGTC GACGCGGTCG AATCGGAACC GGCGCACTCG GCGCCATCGG CCCCATCCTC ACTGCCAGCA CAGCCACCAC CACCGCCGCC CATCGAAGAC CTCGCTTACC AAGGCAATCA GACCTGGGAG ATCGACCGCG CCCAGCTGCT CGAACGCTCC GAACGCCGCG CCTGGCAGGT GGCCGTCGCG GCCGGCCTGC TCGCGCTGAC CGGCATCACA GCGGTGTTCG TGCAGGGGCC GCTGCGCCGC ATCGTCGAGA TCCCCATCGT GGTCGACCGC GTCACCGGCG AGACTACGAT CCAGCAGCGC CTGGACGTCG AGACCATTCC GACGATGGAG GCGCTGGACA AGCACAACCT CGCCGCCTTC GTGCGGGCCC GCGAGGGCTA CAGCTGGATG TTCCTGCAGC GCGACTTCGA CCAGGTTGCG CGCATGGCGG CGCAGCCGGT GTTCGGGGAC TACGCGCGGC TGTTCGAAGG CGACGCGGCA CTGCAGAAGA AGCTCGGCGC CAGCGAGGAC TGGCGCATCC GCATCGTCGG CGTGCGGCTC TCGCCGACCG GCCGCAAGGG CAACCGCGGT GACGCCACCG TCACCTACGA CAAGGCCGTG CGGCAGACCG ACCGCAACCT GGCCGAGGTC GTGACCCGCC ACGTCGCCAG CGTCGTCTTC CAGTACCAGC CCCAGGCGCT GAGCAAGGAA GCCGACCGCC TGGAGAACCC CTTCGGTTTC GTCGTGACCG CCTACCGGTC CGACCCCGAG ATCAACACCG CCGCATCGGG AGCCAAGCCA TGA
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Protein sequence | MTRTTNDVRD DFFDSDWQAL RQSDLARDPV DAVESEPAHS APSAPSSLPA QPPPPPPIED LAYQGNQTWE IDRAQLLERS ERRAWQVAVA AGLLALTGIT AVFVQGPLRR IVEIPIVVDR VTGETTIQQR LDVETIPTME ALDKHNLAAF VRAREGYSWM FLQRDFDQVA RMAAQPVFGD YARLFEGDAA LQKKLGASED WRIRIVGVRL SPTGRKGNRG DATVTYDKAV RQTDRNLAEV VTRHVASVVF QYQPQALSKE ADRLENPFGF VVTAYRSDPE INTAASGAKP
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