Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0865 |
Symbol | |
ID | 6161702 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 930553 |
End bp | 931500 |
Gene Length | 948 bp |
Protein Length | 315 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641663615 |
Product | conjugal transfer protein TrbG/VirB9/CagX |
Protein accession | YP_001789902 |
Protein GI | 171057553 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3504] Type IV secretory pathway, VirB9 components |
TIGRFAM ID | [TIGR02781] P-type conjugative transfer protein VirB9 |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGACAGC GACTTCATCC CGGGTCATGG TGGGTCGGTG TGGCGTGGGC CTTCGCCCTG CTGGCGGCCC TGTCCGCGTC GGCATCGGAT GCGCAGGCCA CCGAACCCGC ACCCAGTGAT CCGCGCCTGC GCGAGGTTAT CTACGACCCG CAGGCCGTCG TCACCGTGCC GGTGCGGCGC GGGGTCGTGA CCCATGTGCA GCTCGATGCC GACGAGGCCA TCACCGAGGT CGCTGCCGGC CTGGGCGGTG ACTGCACCCG GCCGGAATCG GCCTGGTGCG TGGTCGCCCA AGCCGGCGGG CGCAGCTTCT TCGTGAAGGC CCGCAGCAGC GCCTCGGCGC CCAACAACCT GGCCGTGCTG ACGACCCGGC GCACGCATGC ATTCGAGTTC GTCGTGCTGG GGCCGGGTGA TGCGAGAGCG CCGGTCTACC GGTTGTCGGT GAAGGCGGCA CCGCCGCCCA GGCCCTCGGT GGCGGAGATC CCCGCGCTGC CGGCCTTGCC GGACCTGCCA CCGCTGCCGG CGCCCGAGGA GCTCGTGCTC GCCCGCCTGC AGGCCCAGCC GCAGGTGCGC AACACCGACT ACACGCTGGC CGAGGGCGAG CACGCGCAGG ACATCGTGCC GACGCTGGTG TTCGACGACG GGCGCTTCAC CTACCTGAAG TTCCCCGGTC AGCGCGAGGT GCCGGCCGCC TTCCAGGTGC TGGGCGATGG CAGCGAAGCG CTGGTCAACA CCCGCATGGA AGGCGACCTG ATGGTCATCG ACCGGGTCGC TCGGCGCTTC GTGCTGCGCG CGGGCTCGGC CGTGGTCGGG CTCTGGAACG AGGGCTTCGA CCTCGACAGC CCGTCATCCG GCAGCGGCAC CACGGTGCCC GGCGTGTCTC GTGCGTTGAA GGCTGAAGGC ACCCCGAACC GCTCGAACCG CAAACGTGGA GGAACTGGAC ATGACTGA
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Protein sequence | MRQRLHPGSW WVGVAWAFAL LAALSASASD AQATEPAPSD PRLREVIYDP QAVVTVPVRR GVVTHVQLDA DEAITEVAAG LGGDCTRPES AWCVVAQAGG RSFFVKARSS ASAPNNLAVL TTRRTHAFEF VVLGPGDARA PVYRLSVKAA PPPRPSVAEI PALPALPDLP PLPAPEELVL ARLQAQPQVR NTDYTLAEGE HAQDIVPTLV FDDGRFTYLK FPGQREVPAA FQVLGDGSEA LVNTRMEGDL MVIDRVARRF VLRAGSAVVG LWNEGFDLDS PSSGSGTTVP GVSRALKAEG TPNRSNRKRG GTGHD
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