Gene Lcho_0865 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0865 
Symbol 
ID6161702 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp930553 
End bp931500 
Gene Length948 bp 
Protein Length315 aa 
Translation table11 
GC content71% 
IMG OID641663615 
Productconjugal transfer protein TrbG/VirB9/CagX 
Protein accessionYP_001789902 
Protein GI171057553 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3504] Type IV secretory pathway, VirB9 components 
TIGRFAM ID[TIGR02781] P-type conjugative transfer protein VirB9 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGACAGC GACTTCATCC CGGGTCATGG TGGGTCGGTG TGGCGTGGGC CTTCGCCCTG 
CTGGCGGCCC TGTCCGCGTC GGCATCGGAT GCGCAGGCCA CCGAACCCGC ACCCAGTGAT
CCGCGCCTGC GCGAGGTTAT CTACGACCCG CAGGCCGTCG TCACCGTGCC GGTGCGGCGC
GGGGTCGTGA CCCATGTGCA GCTCGATGCC GACGAGGCCA TCACCGAGGT CGCTGCCGGC
CTGGGCGGTG ACTGCACCCG GCCGGAATCG GCCTGGTGCG TGGTCGCCCA AGCCGGCGGG
CGCAGCTTCT TCGTGAAGGC CCGCAGCAGC GCCTCGGCGC CCAACAACCT GGCCGTGCTG
ACGACCCGGC GCACGCATGC ATTCGAGTTC GTCGTGCTGG GGCCGGGTGA TGCGAGAGCG
CCGGTCTACC GGTTGTCGGT GAAGGCGGCA CCGCCGCCCA GGCCCTCGGT GGCGGAGATC
CCCGCGCTGC CGGCCTTGCC GGACCTGCCA CCGCTGCCGG CGCCCGAGGA GCTCGTGCTC
GCCCGCCTGC AGGCCCAGCC GCAGGTGCGC AACACCGACT ACACGCTGGC CGAGGGCGAG
CACGCGCAGG ACATCGTGCC GACGCTGGTG TTCGACGACG GGCGCTTCAC CTACCTGAAG
TTCCCCGGTC AGCGCGAGGT GCCGGCCGCC TTCCAGGTGC TGGGCGATGG CAGCGAAGCG
CTGGTCAACA CCCGCATGGA AGGCGACCTG ATGGTCATCG ACCGGGTCGC TCGGCGCTTC
GTGCTGCGCG CGGGCTCGGC CGTGGTCGGG CTCTGGAACG AGGGCTTCGA CCTCGACAGC
CCGTCATCCG GCAGCGGCAC CACGGTGCCC GGCGTGTCTC GTGCGTTGAA GGCTGAAGGC
ACCCCGAACC GCTCGAACCG CAAACGTGGA GGAACTGGAC ATGACTGA
 
Protein sequence
MRQRLHPGSW WVGVAWAFAL LAALSASASD AQATEPAPSD PRLREVIYDP QAVVTVPVRR 
GVVTHVQLDA DEAITEVAAG LGGDCTRPES AWCVVAQAGG RSFFVKARSS ASAPNNLAVL
TTRRTHAFEF VVLGPGDARA PVYRLSVKAA PPPRPSVAEI PALPALPDLP PLPAPEELVL
ARLQAQPQVR NTDYTLAEGE HAQDIVPTLV FDDGRFTYLK FPGQREVPAA FQVLGDGSEA
LVNTRMEGDL MVIDRVARRF VLRAGSAVVG LWNEGFDLDS PSSGSGTTVP GVSRALKAEG
TPNRSNRKRG GTGHD