Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0864 |
Symbol | |
ID | 6161701 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 929082 |
End bp | 930560 |
Gene Length | 1479 bp |
Protein Length | 492 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641663614 |
Product | conjugation TrbI family protein |
Protein accession | YP_001789901 |
Protein GI | 171057552 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGAGC CCACGAAGAC ATCGGACGAC GAAGCCCCTG CAGAACGCAC CCGCGTCGAA GCAAGCATGG CACCGGCTCC AGGCCCAGGA CATCCGAACC AGATCGAACC CCTGCCCGGC GAAGCCGGCA TCCCCGACGT CGCCGCGCAG GCGCGGGCCC AGCGTTCACG CAAGGGCCAG ATCGCGCTCG CGATGCTGGT GCTATCGATC GCGGTGGTGT CGGCGATGGC GTTGCAACGC TCGTTCTCGA CCGGCAAGCT GGAGGAGCGC AAAGAGGCCA AGCCCAATCG CGACCGCCCC GCTGCGACGG TGAGCGCGCC ACGCCAGCTC GACCTGACCG GTCTGCCACC AGGGCCCGGC GCGGCGAGTG CCACGAGTTC AGCCGCCCCA TTGGCCTCCG GTCCGCGCAT CCCCGCCATC ACGACCACCG CTGACGATCG AGCCGAGCCC ATCGGCGTGC GGCGCACGAC TCCGGCATCC GGCAGCTCGC CCGCCACGAA ACTGCCGCCG CCGGAAGACG CGCCTGTGCT GCTGGCCTCC AGTCGTCCCG GCGCCGTGGC GACCGCAGCG CCGGCGACGA CAACTCCCTC AGAACCCGAC GGCAAGGCCG ACCCGCTCGC GGCCACACAG CGCAACCTGC AGGCCTACCA GTCGCAGCTT CAGGGCCTGA TGGACACGCT GAGCCGGACA GCCATCGCGG CCACGTCGCG CAACGAGGAG CCCGCCGCCA CGATGCCGCC GAACCGACCG GCCCCGATCA ACGCGCCGGG ATCGACCAGC AGCAGCCCGG CGTCCGGTGG CTTGTTCGGC GGCCAGTTAC AGGGCTCGGC CACACCCCGC GTCAGCGCCA CGATGCTGGG CGACCGCAGC CTAACGCTGC CCAAGGGCAC GGCCTTCACC TGTGCCCTCA AGACCCGGGT CATCAGCGCG AACTCGGGTC TGGTCGGTTG CCAGGTCCAG CGCAACGTCT ACAGCGACAA CGGCCGGGTG CTGCTGATCG AACGCGGCTC GCACCTGGAC GGCGAGTACC GCATCGCGTC GGTCAAGCCG GGCACGGTGC GCATCCCCGT GCTGTGGACC CGCATCCGCA CGCCGCTGGG CGTGACGGTG GACATCGAGT CGCCCGGCAC CGGCCCGCTG GGCGAGTCCG GCATCGACGG CCACGTCGAC AACCGCTGGA GCGAACGCCT CGGTGCGGCG ATGCTGCTGT CGCTGATCGA CGACTCGGTC AAGCTGGTGA TCCAGCAGCA GTCCGGCGAC GGTGCGGGCA ACGGCGGCAA TGGCGGCAAT ACCGTCGTAC TGCCCTCGAC CACCGCGCAG ACCAGCAAGC TGGCCGAGAA GGTGCTGGAG AGCACGATCA ACATCCCACC GCTGATCTAC CAGAACCAGG GCGGCGTAGT CGGCATCTAC GTCGGGCGCG ACGTCGACTT CTCGTCGGTC TACGAGCTGC GACCGGTCTC GGGCGACGCC GCGCGCTGA
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Protein sequence | MTEPTKTSDD EAPAERTRVE ASMAPAPGPG HPNQIEPLPG EAGIPDVAAQ ARAQRSRKGQ IALAMLVLSI AVVSAMALQR SFSTGKLEER KEAKPNRDRP AATVSAPRQL DLTGLPPGPG AASATSSAAP LASGPRIPAI TTTADDRAEP IGVRRTTPAS GSSPATKLPP PEDAPVLLAS SRPGAVATAA PATTTPSEPD GKADPLAATQ RNLQAYQSQL QGLMDTLSRT AIAATSRNEE PAATMPPNRP APINAPGSTS SSPASGGLFG GQLQGSATPR VSATMLGDRS LTLPKGTAFT CALKTRVISA NSGLVGCQVQ RNVYSDNGRV LLIERGSHLD GEYRIASVKP GTVRIPVLWT RIRTPLGVTV DIESPGTGPL GESGIDGHVD NRWSERLGAA MLLSLIDDSV KLVIQQQSGD GAGNGGNGGN TVVLPSTTAQ TSKLAEKVLE STINIPPLIY QNQGGVVGIY VGRDVDFSSV YELRPVSGDA AR
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