Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0862 |
Symbol | |
ID | 6160365 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 925925 |
End bp | 927958 |
Gene Length | 2034 bp |
Protein Length | 677 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641663612 |
Product | TRAG family protein |
Protein accession | YP_001789899 |
Protein GI | 171057550 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 0.777114 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAACG TCCACGCCTG GATTCCTGCT GGTCATTGGC CTGCCTGGCT GACCCCGCGC CGAGCGGCAG GGATCGGGTT CGGACTGGCC GCATTCGTGG TGCTGTCGGT CGCGGCGATC TACCTCTCGG CCGCCCTGTT CCTGCTGCTG AACAAGGTCG ATCCACGCCG GGTCGAGTTG ACCAGCCTGT GGACCTACTG GGCGGTCTAC AGCCCGGACC CGGCGCAGCG CAAGCGCTTG TTGGCCTCGA TGACGGCCTC GGGCATCGGC CTGCTGTTGG TGCTGCCCGG TGCGCTGCTG GTGGCGGCGC AACCACGCCG TCGGCTGCAC GGCGATGCCC GCTTCGCGAC CACGGCCGAG ATCACGCGTG CCGGCCTGCT GGGGGGTTCG ACCGATGGCC GGCCCGGCAT CCTGATCGGC CGGCACCGGG GGCAGTTCAT CAGCCTGAGC GGCCAGCTCT CGGTGATGCT GTCGGCCCCG ACCCGCAGCG GCAAGGGCGT CGGGGTGGTG ATCCCCAACC TGCTGAACTG GCCCGACTCG GTGGTGGTGC TGGACATCAA GGGCGAGAAC CACGCGGTCA CGGCGGGCTT CCGGGCGAAG AGCGGCCAGC GGGTCTATGC CTTCGCGCCC TTCGACGACC AGGCCCGCAG CCACCGCTGG AATCCGCTGA CGGCGGTGCG CACGAGCCCG ATGCACCGGG TCGGCGACCT GCTCGCGATC GGCCAGGTGT TCTATCCCAA CGACGGCAGC GGCACCTCGT CGGAAGCCTT CTTCAACGAC CAGGCGCGCA ACCTCTTCCT CGGGCTGGGC CTGCTGTTGC TGGAGACCCC TGCCTTGCCT CGCACGATCG GAGAGCTGCT GCGGCAGTCC TCGGGCAAGG GCCGTGCACT ACGCGACCAC CTGGCCGACC AGATCCGGGG CCGGCGGATC GACAGCAAGG AACTGGGCCC CGCCCTGTCC GACGAGTGCA TCGACGCGCT GCAGCGCCTG CTGTCGAACT CGGAGAACAC GCTGTCCAGC ATCGTCGCGA CCTTCAACGC ACCGCTGACG ATCTTCGCGG ACGCGGTGGT CGATGCGACG ACCAGCGCCG ACGACTTCCG GTTCGAGGAC GTGCGGCGCC AGCGCCTGTC GATCTACGTG CACATCCCGC CGAACCGGCT GACGAGCGCG CGCCCGCTGC TCAACCTGTT CTTCTCGCAG CTGGTCAGCC TCAACACCCA GCAGCTACCC GAGCACGACC CCAGCCTGAC GGTGCAGTGC CTGCTGGTCA ACGACGAGTT CACGACCATG GGCCGGGTCG GAGTGATCAC GATGTCGGCG GCCTTCCTCG CGGGCTACAA CCTGAGGCTG CTGACGGTGG TGCAGGCGAT GTCGCAGCTG GACGCGGTCT ACGGCGACAA GGAGGCCCGC ACCTTCGCGA CCAATCACGG GCTGCAGATC CTGTTCGCGC CACGCGAGCA GCGTGACGCC GACGAGTACA GCGCGATGCT GGGGCACTTC ACCGAGCGGG GCACCTCGCG TGGGCACAGC CGGTCGTTGG GGCCGAATGG CAGTCGATCG GTCAGCGTCA ACGAGAGCGA GCAGCGCCGT GCGCTGTTGC TGCCTCAGGA GTTCAAGGAA CTCGGCAGCG AGCGCCTGGT AGTGATCGCC GAGAACTGCA AGCCCGTCCT GGGCGAGAAG ATCCGCTACC ACCGCGACCC GGCGTTCACC AGCCGGCTGC TGCCGCCGCC CGAGGTGCCG GCGCTGGACA TGGACCTGCA CCTGGCGCGT GTGCAGCAAC GCTGGCGCTT GGTCGAGGGG GACCTGGCGC CGGACGAGAC GGTGTCCATC GAGCGGTTGG CCCACGACAT CAACCAGTTG CCGGACCACT TCACGGAGCT GTCGGCACAG CAGATGGCCG ACGCCTGCCT GGACTTCTTC TCGGAAAAAG AAGCTCAGCC CAGCGGCGGC ACCGTCGAAG CCGCGGCCGA CGAGGAAGGC GTCCTGATCT CGAACGACGT CGCCCGAGAA GCGGCCCCTA CACCCGATGC CTGA
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Protein sequence | MSNVHAWIPA GHWPAWLTPR RAAGIGFGLA AFVVLSVAAI YLSAALFLLL NKVDPRRVEL TSLWTYWAVY SPDPAQRKRL LASMTASGIG LLLVLPGALL VAAQPRRRLH GDARFATTAE ITRAGLLGGS TDGRPGILIG RHRGQFISLS GQLSVMLSAP TRSGKGVGVV IPNLLNWPDS VVVLDIKGEN HAVTAGFRAK SGQRVYAFAP FDDQARSHRW NPLTAVRTSP MHRVGDLLAI GQVFYPNDGS GTSSEAFFND QARNLFLGLG LLLLETPALP RTIGELLRQS SGKGRALRDH LADQIRGRRI DSKELGPALS DECIDALQRL LSNSENTLSS IVATFNAPLT IFADAVVDAT TSADDFRFED VRRQRLSIYV HIPPNRLTSA RPLLNLFFSQ LVSLNTQQLP EHDPSLTVQC LLVNDEFTTM GRVGVITMSA AFLAGYNLRL LTVVQAMSQL DAVYGDKEAR TFATNHGLQI LFAPREQRDA DEYSAMLGHF TERGTSRGHS RSLGPNGSRS VSVNESEQRR ALLLPQEFKE LGSERLVVIA ENCKPVLGEK IRYHRDPAFT SRLLPPPEVP ALDMDLHLAR VQQRWRLVEG DLAPDETVSI ERLAHDINQL PDHFTELSAQ QMADACLDFF SEKEAQPSGG TVEAAADEEG VLISNDVARE AAPTPDA
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