Gene Lcho_0855 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0855 
Symbol 
ID6160414 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp918572 
End bp919789 
Gene Length1218 bp 
Protein Length405 aa 
Translation table11 
GC content68% 
IMG OID641663605 
Product3,4-dihydroxy-2-butanone 4-phosphate synthase 
Protein accessionYP_001789892 
Protein GI171057543 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0108] 3,4-dihydroxy-2-butanone 4-phosphate synthase
[COG0807] GTP cyclohydrolase II 
TIGRFAM ID[TIGR00505] GTP cyclohydrolase II
[TIGR00506] 3,4-dihydroxy-2-butanone 4-phosphate synthase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones54 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCTTGC ATCGAATCGA AGACGCGCTC GCCGCGCTGG CACGTGGCGA GATGGTGGTG 
GTGGTCGATG ACGAAGACCG CGAGAACGAA GGCGATCTCA TCCTCGCCGC AGAACACGCG 
ACACCCGCAT CCATCGCCTT CATGGTTCGC CACACCAGCG GCATGCTCTG CGTGGGCTTG 
CCCGGTGAGC GCCTGGATCA CCTCGAACTG CCGCTCATGG TGGAGCGCAA CACCGACTCG 
ATGCGCACGG CCTACACCGT CACCGTCGAC TACCGGCACG GCACCACGAC GGGCATCTCC 
GCGGCTGATC GTGCCACCAC CATCCGCGCG CTGGTCGACC CTTCGGTCGA GCCGTCGGAC 
TTCAACCGGC CCGGCCACGT GTTCCCGCTG CGTGCCGCAC CGGGCGGCGT GCTGCACCGC 
ACCGGTCACA CCGAAGCTTC GGTCGACCTG ACCCGGCTGG CGGGCCTGCG CCCCGGCGGC 
GTGCTGGCCG AGGTGGTCAA CGACGACGGC ACGATGGCAC GCCGCCCGCA GCTCGAAGCC 
TTTGCCCGCG AGCACGACCT CGTGATGGTC TCGATCGCCG ACCTGGTCGC CTACCGTCGC 
CAGCGCATCA AGGTGCGCTG CGAATCCGAG GCGCGCCTGC CGACCCGGCA TGGCATGTTC 
AAGGCCTGCG TCTACCGCTC GCAAGGCGGC GAGCACGAAC ACCTGGCCAT GGTCATGGGC 
GACCTCGCGG GCGCCGAGAA CGTGCTCGTC CGTGTCCATT CGGAGTGCCT CACGGGCGAC 
ACCTTCGGCT CGCTGCGCTG CGATTGCCAG CAGCAGCTCG AGGCCTCGCT GGCCGCCGTC 
GGCCGAGCCG GAAGCGGCGT CGTGCTCTAC CTGCGCGGCC ATGAGGGACG CGGTATCGGC 
CTGACCCACA AGCTGCGCGC CTATGCTCTG CAGGACGAGG GCCTCGACAC CGTCGAGGCC 
AACCTCGAAC TGGGCCTGTC GGTCGATGCG CGCGACTACA GCGTCGGCGC CCTGATCCTG 
CAGGACATCG GGATCACGAG CATCCGCCTG CTGAGCAACA ACCCGGCGAA GTACCGAGGC 
ATCGCGGAAT TCGGTCTGCA GATCAGCGAA CGCGTGCCGC TGCACACGCC CCCGACCGCC 
GAGAACGAAG CCTACCTGCG GACCAAGCAA CGGCGGATGG GCCACACGCT CGGACTGCCG 
GCCGAGGCCA CATCGTGA
 
Protein sequence
MTLHRIEDAL AALARGEMVV VVDDEDRENE GDLILAAEHA TPASIAFMVR HTSGMLCVGL 
PGERLDHLEL PLMVERNTDS MRTAYTVTVD YRHGTTTGIS AADRATTIRA LVDPSVEPSD 
FNRPGHVFPL RAAPGGVLHR TGHTEASVDL TRLAGLRPGG VLAEVVNDDG TMARRPQLEA 
FAREHDLVMV SIADLVAYRR QRIKVRCESE ARLPTRHGMF KACVYRSQGG EHEHLAMVMG 
DLAGAENVLV RVHSECLTGD TFGSLRCDCQ QQLEASLAAV GRAGSGVVLY LRGHEGRGIG 
LTHKLRAYAL QDEGLDTVEA NLELGLSVDA RDYSVGALIL QDIGITSIRL LSNNPAKYRG 
IAEFGLQISE RVPLHTPPTA ENEAYLRTKQ RRMGHTLGLP AEATS