Gene Lcho_0854 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0854 
Symbol 
ID6160413 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp916412 
End bp918391 
Gene Length1980 bp 
Protein Length659 aa 
Translation table11 
GC content67% 
IMG OID641663604 
ProductFis family GAF modulated sigma54 specific transcriptional regulator 
Protein accessionYP_001789891 
Protein GI171057542 
COG category[K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG3284] Transcriptional activator of acetoin/glycerol metabolism 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones54 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCAAACG ACAGTCACGC GCATTTCGTC ATGGCCGCAC TGGAAGGCAA GCGGCCGATC 
CAGATGCCCA ACGTCAATGC GGGTCTGCTT GCATCGTGGA TGCGCAGCGT CACCGAACAT
GGACTGGAAC CGGATCGGAT CCAGGAGCCC GATGTCCTCA CGCACGCCGA GCTGCTCGAG
CGACGTGCGC CGATCGAGGA GATGAGCGCA TTCTCGTCGC CCGAGATCGA TCGGCTCTAT
CAGCACCTGA GCGACCACGC CCAGGTGGTC ATGCTGTCCG ATGCTCAGGG TGTCGTGATC
CACTTCCGCA GCAACTCGAC GGTGGTCGAC ACCTGTTCGG CTCTGCGGGT GCTGCCGGGC
TCGATCTGGA GCGAGGACAA GCAGGGCACG ACGGGCGTCG GGCTGTGCCT GCGCGAGCAG
AAGCCACTGT CGATCGTGAT GGCCGAACAC TTCGCGACCA AGCTGGCCGG CCTGAGTTGC
ACCGTCGCGC CGATCTTCGG CGCTGAAGGC CGCCTTGTCG GCGTGCTGAA CGTGACGGCC
ATGCGCAGCA CCGACCACGC CTTGCAAGGT GTCGTGCGCG AGATGGTCGC GAACTCCGCC
CGGCGCATCG AGAACGTGTT CTTCGACCGC CGTCATGCGC GTGCGCGCAT CCTGCGTCTG
TCACGTCACG ATGACTTCTG CGACGCGGCT GCCGAGGCCC GGCTGGCGCT CGACGACAAC
GGTCGCATCA TCGATGCGAC GCCGCCCGCT CTGCGCCTGC TGACGGGCAG CACCCTGAAC
GACAGGCCTG ACGTCCTGAT CGGCCGCAAG CTGAGTTCGA TCGTCGATGT CGGCAACGTC
GAACGTCTGT TGCAGGAAGC TGCGCCGACG ATCAACGGCA AGCAGGGCTG CATCCACGTC
CGCGTCACCG AGCCGCCACG CCGAGCGGCG TCGAGGGCCC CGCAGATCGA CATGCTCTCT
CGTGCTTCAC GACTCGCCGC CAGCACCTTG AGCACTTCGG GAACACGGGC CTCGGTGGCT
CCTACCCTCG AAGAGATTGT TGGCAGCGAC ACCGCCATGC TGGACCGCCT GCGCATCGCG
CAACGCTTGC ACGCGCGATG TCTGCCGCTG CTGCTGCAAG GTGAGAGCGG CTGCGGCAAG
ACGCAATTGG CACGCGCACT GCACGAGGAC GGCCCACATC GCAGCGGTGG TTTTGTCGCC
ATCAATTGCG CGGCCATCCC GCAGGAACTG ATCGAGAGCG AGTTGTTCGG ACACCGGTCC
GGCGCCTTCA CGGGTGCGGC CAAGCAGGGC GCGCCAGGAC GACTGCTCGG CGCCAACGAT
GGCACGCTGT TCCTCGACGA GATCGGCGAC ATGCCGCTGG GCCTGCAGGG GCGGCTGCTG
CAGGTGTTGT CGGAGGGCGA ATTCGTCCCG GTCGGTGCGA CGCAGCCGGT CAAGGTCCGG
TTCGCCCTGA TCTCGGCCAC CTTGCGCGAC CTGAAGTCGC TGGTGCAGGA AGGCCGCTTC
CGTGAAGACC TCTATTACCG CCTGAGCGGG GCCACGCTGG CCCTGCCGCC GCTGCGCGAG
CGGACCGACC TGGGGCAGCT GATCGAGCGC GCCTTCGCGC GGGCGGCGCT GGAGGCCGGC
ATCGAGGAAA GCCGGCTGTC GCAGGCCGCG CGCGATGTGC TGCTGCGGCA CCGCTGGCCG
GGCAACATCC GGGAACTGCA GCATGTCGCC AAATTCACGG CGGCCATCAA CGACAGCGAG
GTGATCGGCC TCGATGCCCT GCCAGCTTCA CTGATCGAGC AGGCCGATGC GCGCCATCCT
GCCGGCCAGA CACGGCCGGC GGCTACCCGC ACGGTGTCAG ATGCCGAGTC GCTGCTCGAC
CTGATGGAGC AGTCGCACTG GAATGTCTCG GCCGCTGCGG CACGGCTGGG CATTTCTCGG
GCCACGCTGC ACCGGCGGCT CAACGAATTC GACGTGCACC GTCCGCGCAA GCCGCACTGA
 
Protein sequence
MANDSHAHFV MAALEGKRPI QMPNVNAGLL ASWMRSVTEH GLEPDRIQEP DVLTHAELLE 
RRAPIEEMSA FSSPEIDRLY QHLSDHAQVV MLSDAQGVVI HFRSNSTVVD TCSALRVLPG
SIWSEDKQGT TGVGLCLREQ KPLSIVMAEH FATKLAGLSC TVAPIFGAEG RLVGVLNVTA
MRSTDHALQG VVREMVANSA RRIENVFFDR RHARARILRL SRHDDFCDAA AEARLALDDN
GRIIDATPPA LRLLTGSTLN DRPDVLIGRK LSSIVDVGNV ERLLQEAAPT INGKQGCIHV
RVTEPPRRAA SRAPQIDMLS RASRLAASTL STSGTRASVA PTLEEIVGSD TAMLDRLRIA
QRLHARCLPL LLQGESGCGK TQLARALHED GPHRSGGFVA INCAAIPQEL IESELFGHRS
GAFTGAAKQG APGRLLGAND GTLFLDEIGD MPLGLQGRLL QVLSEGEFVP VGATQPVKVR
FALISATLRD LKSLVQEGRF REDLYYRLSG ATLALPPLRE RTDLGQLIER AFARAALEAG
IEESRLSQAA RDVLLRHRWP GNIRELQHVA KFTAAINDSE VIGLDALPAS LIEQADARHP
AGQTRPAATR TVSDAESLLD LMEQSHWNVS AAAARLGISR ATLHRRLNEF DVHRPRKPH