Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_0854 |
Symbol | |
ID | 6160413 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 916412 |
End bp | 918391 |
Gene Length | 1980 bp |
Protein Length | 659 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641663604 |
Product | Fis family GAF modulated sigma54 specific transcriptional regulator |
Protein accession | YP_001789891 |
Protein GI | 171057542 |
COG category | [K] Transcription [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 54 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCAAACG ACAGTCACGC GCATTTCGTC ATGGCCGCAC TGGAAGGCAA GCGGCCGATC CAGATGCCCA ACGTCAATGC GGGTCTGCTT GCATCGTGGA TGCGCAGCGT CACCGAACAT GGACTGGAAC CGGATCGGAT CCAGGAGCCC GATGTCCTCA CGCACGCCGA GCTGCTCGAG CGACGTGCGC CGATCGAGGA GATGAGCGCA TTCTCGTCGC CCGAGATCGA TCGGCTCTAT CAGCACCTGA GCGACCACGC CCAGGTGGTC ATGCTGTCCG ATGCTCAGGG TGTCGTGATC CACTTCCGCA GCAACTCGAC GGTGGTCGAC ACCTGTTCGG CTCTGCGGGT GCTGCCGGGC TCGATCTGGA GCGAGGACAA GCAGGGCACG ACGGGCGTCG GGCTGTGCCT GCGCGAGCAG AAGCCACTGT CGATCGTGAT GGCCGAACAC TTCGCGACCA AGCTGGCCGG CCTGAGTTGC ACCGTCGCGC CGATCTTCGG CGCTGAAGGC CGCCTTGTCG GCGTGCTGAA CGTGACGGCC ATGCGCAGCA CCGACCACGC CTTGCAAGGT GTCGTGCGCG AGATGGTCGC GAACTCCGCC CGGCGCATCG AGAACGTGTT CTTCGACCGC CGTCATGCGC GTGCGCGCAT CCTGCGTCTG TCACGTCACG ATGACTTCTG CGACGCGGCT GCCGAGGCCC GGCTGGCGCT CGACGACAAC GGTCGCATCA TCGATGCGAC GCCGCCCGCT CTGCGCCTGC TGACGGGCAG CACCCTGAAC GACAGGCCTG ACGTCCTGAT CGGCCGCAAG CTGAGTTCGA TCGTCGATGT CGGCAACGTC GAACGTCTGT TGCAGGAAGC TGCGCCGACG ATCAACGGCA AGCAGGGCTG CATCCACGTC CGCGTCACCG AGCCGCCACG CCGAGCGGCG TCGAGGGCCC CGCAGATCGA CATGCTCTCT CGTGCTTCAC GACTCGCCGC CAGCACCTTG AGCACTTCGG GAACACGGGC CTCGGTGGCT CCTACCCTCG AAGAGATTGT TGGCAGCGAC ACCGCCATGC TGGACCGCCT GCGCATCGCG CAACGCTTGC ACGCGCGATG TCTGCCGCTG CTGCTGCAAG GTGAGAGCGG CTGCGGCAAG ACGCAATTGG CACGCGCACT GCACGAGGAC GGCCCACATC GCAGCGGTGG TTTTGTCGCC ATCAATTGCG CGGCCATCCC GCAGGAACTG ATCGAGAGCG AGTTGTTCGG ACACCGGTCC GGCGCCTTCA CGGGTGCGGC CAAGCAGGGC GCGCCAGGAC GACTGCTCGG CGCCAACGAT GGCACGCTGT TCCTCGACGA GATCGGCGAC ATGCCGCTGG GCCTGCAGGG GCGGCTGCTG CAGGTGTTGT CGGAGGGCGA ATTCGTCCCG GTCGGTGCGA CGCAGCCGGT CAAGGTCCGG TTCGCCCTGA TCTCGGCCAC CTTGCGCGAC CTGAAGTCGC TGGTGCAGGA AGGCCGCTTC CGTGAAGACC TCTATTACCG CCTGAGCGGG GCCACGCTGG CCCTGCCGCC GCTGCGCGAG CGGACCGACC TGGGGCAGCT GATCGAGCGC GCCTTCGCGC GGGCGGCGCT GGAGGCCGGC ATCGAGGAAA GCCGGCTGTC GCAGGCCGCG CGCGATGTGC TGCTGCGGCA CCGCTGGCCG GGCAACATCC GGGAACTGCA GCATGTCGCC AAATTCACGG CGGCCATCAA CGACAGCGAG GTGATCGGCC TCGATGCCCT GCCAGCTTCA CTGATCGAGC AGGCCGATGC GCGCCATCCT GCCGGCCAGA CACGGCCGGC GGCTACCCGC ACGGTGTCAG ATGCCGAGTC GCTGCTCGAC CTGATGGAGC AGTCGCACTG GAATGTCTCG GCCGCTGCGG CACGGCTGGG CATTTCTCGG GCCACGCTGC ACCGGCGGCT CAACGAATTC GACGTGCACC GTCCGCGCAA GCCGCACTGA
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Protein sequence | MANDSHAHFV MAALEGKRPI QMPNVNAGLL ASWMRSVTEH GLEPDRIQEP DVLTHAELLE RRAPIEEMSA FSSPEIDRLY QHLSDHAQVV MLSDAQGVVI HFRSNSTVVD TCSALRVLPG SIWSEDKQGT TGVGLCLREQ KPLSIVMAEH FATKLAGLSC TVAPIFGAEG RLVGVLNVTA MRSTDHALQG VVREMVANSA RRIENVFFDR RHARARILRL SRHDDFCDAA AEARLALDDN GRIIDATPPA LRLLTGSTLN DRPDVLIGRK LSSIVDVGNV ERLLQEAAPT INGKQGCIHV RVTEPPRRAA SRAPQIDMLS RASRLAASTL STSGTRASVA PTLEEIVGSD TAMLDRLRIA QRLHARCLPL LLQGESGCGK TQLARALHED GPHRSGGFVA INCAAIPQEL IESELFGHRS GAFTGAAKQG APGRLLGAND GTLFLDEIGD MPLGLQGRLL QVLSEGEFVP VGATQPVKVR FALISATLRD LKSLVQEGRF REDLYYRLSG ATLALPPLRE RTDLGQLIER AFARAALEAG IEESRLSQAA RDVLLRHRWP GNIRELQHVA KFTAAINDSE VIGLDALPAS LIEQADARHP AGQTRPAATR TVSDAESLLD LMEQSHWNVS AAAARLGISR ATLHRRLNEF DVHRPRKPH
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