| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0843 |
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| Symbol | |
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| ID | 6161638 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 903176 |
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| End bp | 904399 |
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| Gene Length | 1224 bp |
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| Protein Length | 407 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641663593 |
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| Product | inner-membrane translocator |
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| Protein accession | YP_001789880 |
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| Protein GI | 171057531 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4214] ABC-type xylose transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 74 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACAAG TTCTGTCTGC CCCGATCGAT TCCGGCACCT TCCCGCCGCC GCCCAAGCGC
CGTACCTTCG GCGAACTCCT GGCCACCGAT CTGCGCGCAT TGCCCGTGGT CATCGGCCTC
GTCGCGCTGT GGATCTTCTT CGCGATCCAG AGCGACGTCT TCCTGTCGCC CCAGAACCTG
TCCAACCTGC TGCTGCAGAG CACGGTGGTC GGCATCATGG CCCTGGGCCT GATGTTCGTG
CTGCTGGTCA AGGAAATCGA CCTGTCGGTG GCCGCCATCA ACGGCGTCAC CGCCGTGCTG
ATGGCCAAGC TGATCGTCGA GTTCGGCTTC TCGCCGTGGA CCGCGGTGGC AGCGGCCGTC
GCAGCCGGCG CCGTGATCGG CTGCCTGTCG GCGCGCTGGA TGACCTATGT CGGCGTGCCG
TCGTTCGTCG TCACACTCGG CCTGGGCCTG GCGCTCAATG GCGCTCAACT GCTGCTGCTG
CCGCCGACGG CGCGTTATGG CCTGATGGGT TCGGGCATCG AGCAGATCGC GCAGACCCGC
ATCGAAGGCG TCTGGGCCTG GGCCCTGCTG GTCGCCGGAC TGCTGATCTA CGTCGGCATC
ACCGTCTCGA ATGCCTGGCG GCGCCGACGC GTCGGCCTGC CGGTGTCGAT GCTGTCGGGA
CTGGTTGCTC CGCTGCTGGG CGGAACCCTG CTGGGTGTGG GCGTCATCGC CGTGCTCAAC
GCGCACCAGG GCGTGCCCCT GCTGGTGCTG ATCTTCGCGG CGATGCTGGG CCTGGGCGGC
TACGTGCTCA AGGAGACCCA GTTCGGTCTC TACCTCTACG CGGTCGGCAA CAACGACGAA
GCGGCCCGCC GCACCGGCGT CAATGTCGGC CGGATCAAGA TGGCGGCCTT CGGGATTGCC
GGTGCCGTGG CAGCGATCGC CGGTGTGCTG GCTGCTTCAC GCACCCTGGG CGTGGGCGTG
TTCTCGGGTG GTGGCATCGG CGGCGGCACG CTGCTGCTGG AGTCGATCGC TGCGGCCGTG
ATCGGTGGTG TCAGCCTGTT CGGCGGGCGC GGCTCGGTGC ATGCTGCGCT GCTGGGCGCG
CTGGTCATCG GCACGGTCCA GAACGGCCTG AACCTGATGG GCGTGGAAAA CGAGATCCGC
TTGATCGTCA CCGGCATGCT GCTGGTGCTG GCGGTCTCGA TCGACAAGCT GATCGAGAAG
GCCACGGGGC AACAGGCCTT CTGA
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| Protein sequence | MAQVLSAPID SGTFPPPPKR RTFGELLATD LRALPVVIGL VALWIFFAIQ SDVFLSPQNL
SNLLLQSTVV GIMALGLMFV LLVKEIDLSV AAINGVTAVL MAKLIVEFGF SPWTAVAAAV
AAGAVIGCLS ARWMTYVGVP SFVVTLGLGL ALNGAQLLLL PPTARYGLMG SGIEQIAQTR
IEGVWAWALL VAGLLIYVGI TVSNAWRRRR VGLPVSMLSG LVAPLLGGTL LGVGVIAVLN
AHQGVPLLVL IFAAMLGLGG YVLKETQFGL YLYAVGNNDE AARRTGVNVG RIKMAAFGIA
GAVAAIAGVL AASRTLGVGV FSGGGIGGGT LLLESIAAAV IGGVSLFGGR GSVHAALLGA
LVIGTVQNGL NLMGVENEIR LIVTGMLLVL AVSIDKLIEK ATGQQAF
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