| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0839 |
|---|
| Symbol | |
|---|
| ID | 6161495 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 899188 |
|---|
| End bp | 900066 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641663589 |
|---|
| Product | xylose isomerase domain-containing protein |
|---|
| Protein accession | YP_001789876 |
|---|
| Protein GI | 171057527 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1082] Sugar phosphate isomerases/epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 86 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCAATC AAAAAGTTGA GCTGCTGGCC GCGTACTGGA CGCTGGCCGG TGATGTCTAT
CCCGGTGCCC CCACCGAGGT CAGCCCCTAC AGCCTGGAAG ATCGCGCCGC CGCGGCGGCC
CAGGTCGGCT ACACCGGCAT GGGCCTGGTG CACGCCGATC TGATGGCCAA CCGCGACCGC
CTGGGCTGGG CCGGCGTGCG CCAGGTGCTG GCCGACAACG GCATCCGCCA CATCGACGTC
GAGTTCCTGG GCGACTGGTT CTGCGACGCG GCCGACCCGC GCCGCAAGGC CTCCGACCAG
ATGCGCCGCG AACTGTTCGA AGCGGCGGCC GAACTCGGTG CGCGCAACTT CAAGGTCTCG
CCCGAGCTGT TCTCCGAGCA AGCGCCCGAC ATTGCCCACC TGCGCGACGA GTTCGCCCTG
CTGTGCGAGC AGGCGCGCCC GGTCGGCACC AACGTCATCA TGGAAATGAT GCCGTTCACC
AACGTCAACA AGATCGACAC CGCGATGGCC ATCATCGCCG GTGCCGACCA GCCTAACGGC
GGCATCCTGC TCGACATCTG GCACGTCGCG CGCGGCGGCA TGAGCTACGA CGAGATCGCC
AAGATCCCGG CGCGCTTCCT CAAGGGCGTC GAGCTCGACG ACGCCGATCC GCAGATCGTC
GGCACGCTGT TCGAGGACAC CCGCTTCAGC CGCCGCCTGT GCGGCGAGGG CTGCTTCAAC
GTGCCCGCGT TCATCGATGC GGTCTTGGCG GCCGGCTTCG ATGCGCCTTA TTACGGCGTC
GAGATCATCT CGAAGAGCTT CCGACTGCAG CCGCTGGACG TGATGGCGCG CAGTTCCTAC
GAGTCGGCGA TGCGCCAGTT CGCGCACCGC TCGGCCTGA
|
|---|
| Protein sequence | MSNQKVELLA AYWTLAGDVY PGAPTEVSPY SLEDRAAAAA QVGYTGMGLV HADLMANRDR
LGWAGVRQVL ADNGIRHIDV EFLGDWFCDA ADPRRKASDQ MRRELFEAAA ELGARNFKVS
PELFSEQAPD IAHLRDEFAL LCEQARPVGT NVIMEMMPFT NVNKIDTAMA IIAGADQPNG
GILLDIWHVA RGGMSYDEIA KIPARFLKGV ELDDADPQIV GTLFEDTRFS RRLCGEGCFN
VPAFIDAVLA AGFDAPYYGV EIISKSFRLQ PLDVMARSSY ESAMRQFAHR SA
|
|---|
| |