Gene Lcho_0821 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0821 
Symbol 
ID6163606 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp884121 
End bp885179 
Gene Length1059 bp 
Protein Length352 aa 
Translation table11 
GC content65% 
IMG OID641663571 
ProductTRAP dicarboxylate transporter, DctP subunit 
Protein accessionYP_001789858 
Protein GI171057509 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component 
TIGRFAM ID[TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones105 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAGATT CCCAGACCAC TCACGCGAAC GCGGCGCCAG CCGATGGAAG CCGCCGACGT 
GATGTCCTCA AGAAGCTGGC GGCCGTGGCT GCAAGCACGC TCGCTCCGGG CGCGGTACTC 
GCCCAGGCCG CCGGCAAGTT CCACCTGAAG ATTGCCATCT CGCTCCCCGA GAGTCACCCG 
ACCAGCGCGG CGCTGAAGGC CGCCTGCGCC GATATCCTGA AGGAGAGCGG CGGGCGCCTG 
ACGATCGACG TCTATCCCAA CGGCCAGCTC GGCAGCGACA CCGACACGGT CTCGCAGGTG 
CGCTCCGGTG CGATCGATTT CGTCTGCACC GCCGGCACGA TCTGGGGCAA CCTGGTGCCG 
GTCACCTCGA TCAACACGAT CGCGTTCGCC TTCCCCGACT ACGCGACGGT CTGGAAGGCG 
ATGGACGGCG ACCTCGGCGC CCACATCCGC ACTGCGTTCG ACAAGATCAA CCTCGTGCCG 
GTGGGCAAGG TGTTCGACCA CGGTTTCCGC CAGACCACGA CGGCGTCCAA GCCCATCGTC 
GAGCCGAAGG ATCTGGTCGG CATGAAGATC CGGGTGCCGG CCAGCCAGAT CCTGACATCC 
TTGTTCAAGG GCCTGGACGC CTCACCGGCC ACCGTGCCGA TCGGCGAGCT CTACACCGCC 
CTGCAGACCA AGGTCGTGGA CGGCCAGGAA AATTCGCTGC CGACCATCGA CGCGAGCAAG 
CTCTACGAGG TGCAGAAGTA CTGCTCGTAC ACCTCGCACA TGTGGGACTG CTTCACCCTG 
GTCGGCAACA AGCGCATCTG GAACGCGATG CCCGAGGACC TGCGGGCACT GGCCACGCGC 
AACTTCGACG CCCACGCGCT CAAGCAGCGC GCGGCTCACG ATGCGCTGAC GGTCTCGCTG 
GAGACCAAAC TCAAGGGCTT GGGCATGCAG TTCAACAAGG TCGACGTCAG GCCCTTCCGC 
CAGGTGCTGG CGAAGTCCGG CTTCTACGTC GAGTGGCAGA AGAAGTTCGG CCCGGAAGCC 
TGGGCCCTGC TCGAGAAGTA CAGCGGCAAG TTGGTCTGA
 
Protein sequence
MQDSQTTHAN AAPADGSRRR DVLKKLAAVA ASTLAPGAVL AQAAGKFHLK IAISLPESHP 
TSAALKAACA DILKESGGRL TIDVYPNGQL GSDTDTVSQV RSGAIDFVCT AGTIWGNLVP 
VTSINTIAFA FPDYATVWKA MDGDLGAHIR TAFDKINLVP VGKVFDHGFR QTTTASKPIV 
EPKDLVGMKI RVPASQILTS LFKGLDASPA TVPIGELYTA LQTKVVDGQE NSLPTIDASK 
LYEVQKYCSY TSHMWDCFTL VGNKRIWNAM PEDLRALATR NFDAHALKQR AAHDALTVSL 
ETKLKGLGMQ FNKVDVRPFR QVLAKSGFYV EWQKKFGPEA WALLEKYSGK LV