| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0817 |
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| Symbol | |
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| ID | 6163602 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 880451 |
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| End bp | 881206 |
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| Gene Length | 756 bp |
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| Protein Length | 251 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641663567 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001789854 |
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| Protein GI | 171057505 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 104 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTACGA GACTGGCAGG AAAAGTCGCT GTCATCACGG GCGGTGGCGG GGGCATCGGT
TCGGCCGCCG GAAGGATCTT CTGTGCGGAG GGCGCACGCG TGGCCCTGGT TGATCAGAGC
GAAGACGCGG TCATGAGCGC CGTGCATGAC ATACGGCAAG CCATCCCCGG CGCGGAGGTT
CACGGCTTCG TGGCAGACCT GGGCGTGGAG GCCGAAGCCG ACCGCGTGAT CGGCGAGGTG
GTCGCGCGCC TGGGCGCGGT GGACGTCCTG GTGAACAACG TCGGCATCCG GCGCTACGAG
GCCGTGGCCG ATGCGCCGTG GGAGGCGTGG GACGCGATCA TCCGCGTCAA CTTGCTCAGC
TTCGTCTCGA TGACGCGGGC AGCCCTGCCC CACCTGCGCA AGTCGGGCCG CGGCAGCATC
GTCAACACCT CGTCGACCTA TGCCGTGTAC GGCCGCAAGG GCATGGGCGC CTACGACGCC
ACCAAGGCCG GCGTGCTGGC TCTGACGCGC ACGCTCGCCT TCGAGGAAGG CGCGCATGGC
GTGCGCGCCA ACGCGATCTG CCCGGGCTTC ACGCGCACGC CCTTCCACGT CAAGCGGCTC
GGCGCCGCGG CCGTCGAGGA ACTGGTTCCC CCATGCGTCA TGAAGCGGTG GGCCGAGCCC
GCAGAGCTGG CCTATCCGAT GCTCTGGCTC GCCTCGGACG AAGCGTCCTA CGTCACGGGG
GCGACCTTCA TGATCGACGG CGGGCTGCCG GCCTGA
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| Protein sequence | MGTRLAGKVA VITGGGGGIG SAAGRIFCAE GARVALVDQS EDAVMSAVHD IRQAIPGAEV
HGFVADLGVE AEADRVIGEV VARLGAVDVL VNNVGIRRYE AVADAPWEAW DAIIRVNLLS
FVSMTRAALP HLRKSGRGSI VNTSSTYAVY GRKGMGAYDA TKAGVLALTR TLAFEEGAHG
VRANAICPGF TRTPFHVKRL GAAAVEELVP PCVMKRWAEP AELAYPMLWL ASDEASYVTG
ATFMIDGGLP A
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