Gene Lcho_0815 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0815 
Symbol 
ID6162981 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp878337 
End bp879011 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content65% 
IMG OID641663565 
ProductTonB family protein 
Protein accessionYP_001789852 
Protein GI171057503 
COG category[A] RNA processing and modification 
COG ID[COG5178] U5 snRNP spliceosome subunit 
TIGRFAM ID[TIGR01352] TonB family C-terminal domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones101 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAGACT ACGCCAGCCG GCAAAGAAAG CCGACCAAGC ACCTGATCGG TCTTGGACTG 
GTGGTGGTAT TGCATGTCGC CCTGCTCTGG GCGATCAATT CGGGATTGGC CAGGGCTTTT 
GTCAAGAAGA TCAAGGGCCC GGTGGAAGCC GTCATGCTTG AGGAGGCAAA ACCGGACATA 
CCCCCGCCGC CGCCGCCACC ACCGCCGCCG AAGAATGCGC CACCTCCGCC GCCACCACCG 
GCCTATGTTC CACCGGTCGA GGTCCAGGTG ACGCAGGCAC CGGCTGCCAA CGCGATTGCC 
GCGGTCACGA GCGCGCCGCC GAAGGTCGAG CCGCCGCCGG CCCCGCCACC TCCGCCCGCC 
CCGCCGCCGC CGCCGGCCCC TCCGCCGGCT GAACCGGTAC GCACGCCTGC CGTGGTGAAC 
GCGTCGGGTT GCGAGAAGCC GGAATATCCG AGCGCCTCGC GCCGTCTCGA GGAAGAAGGC 
ACCGTGAGTT TGCGATTCCT GGTCGGCGTC GACGGCAAGG TCATCCAGGC CGAGGTCGAG 
AAGAGTTCCG GATTCAAGCG GCTCGATGAA GCGGCCAGAT CAGGTCTGTC TCGCTGCACC 
TTCAAGTCTG CCACCGTCGA CGGCAAACCC GAACAGGGTT GGGCAAACAT GAAATACACC 
TGGCGACTCG AATAA
 
Protein sequence
MEDYASRQRK PTKHLIGLGL VVVLHVALLW AINSGLARAF VKKIKGPVEA VMLEEAKPDI 
PPPPPPPPPP KNAPPPPPPP AYVPPVEVQV TQAPAANAIA AVTSAPPKVE PPPAPPPPPA 
PPPPPAPPPA EPVRTPAVVN ASGCEKPEYP SASRRLEEEG TVSLRFLVGV DGKVIQAEVE 
KSSGFKRLDE AARSGLSRCT FKSATVDGKP EQGWANMKYT WRLE