| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0813 |
|---|
| Symbol | |
|---|
| ID | 6162979 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 876978 |
|---|
| End bp | 877388 |
|---|
| Gene Length | 411 bp |
|---|
| Protein Length | 136 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641663563 |
|---|
| Product | biopolymer transport protein ExbD/TolR |
|---|
| Protein accession | YP_001789850 |
|---|
| Protein GI | 171057501 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0848] Biopolymer transport protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 99 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCATGA ACATCGGCGA AGCCGACGAC GAGATGATAG GCACGATCAA CACGACGCCG
CTGGTCGACG TCATGCTGGT CCTCCTGATC ATCTTCCTGA TCACCATTCC CGTCGTGACG
ACGTCGGTGA AGGTCGACCT GCCGAAGGAA CGCAACACGA TCCGGGAAAC CAAGCCGGAA
AACGTGATCG TGTCGGTCGA CAGCCAGGGC CGGATCTTCC TGTACGACAC GCCGATCAAG
AACGGCAACG AGTTGCAGGA ACGGATGAAG AAGTTTGCGG CCATGAAACC GCAACCCGAA
GTCCAGATCC GCGGCGACCT CAAGAGCGAC TTCGAGTCGG TCGGACGCGT GATGTACGCG
ATACAGCGCA CCGGCATCGT CAAGGTCAGT TTCATCACCG AACCGAGCTG A
|
|---|
| Protein sequence | MAMNIGEADD EMIGTINTTP LVDVMLVLLI IFLITIPVVT TSVKVDLPKE RNTIRETKPE
NVIVSVDSQG RIFLYDTPIK NGNELQERMK KFAAMKPQPE VQIRGDLKSD FESVGRVMYA
IQRTGIVKVS FITEPS
|
|---|
| |