| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0806 |
|---|
| Symbol | |
|---|
| ID | 6162148 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 868242 |
|---|
| End bp | 869501 |
|---|
| Gene Length | 1260 bp |
|---|
| Protein Length | 419 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641663556 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001789843 |
|---|
| Protein GI | 171057494 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2211] Na+/melibiose symporter and related transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 88 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACCC TCACCTCGCC CGCCCACGCC AGCTCGCCTC ATGCCTCCTG GGCGCTGATC
TTCACCATCG TGCTGGCCTA CTGGGCCCTG ACGATGGCCC TGCTGACGCC GCCGATGATG
ACCATCGCGC TGCGGGTCGC CGAGATCGCG CCGCAGAACA AGGAAAGCAC CCTGGGCCTG
CTGCTGGGCA TCGGCGCGAT CGTGGCGATC TTCGCCAACC CGGTCGCCGG CTATTTCAGC
GATCGCACCG TGACCCGATT CGGCCGGCGC AAGTCCTGGA TGGTCGCCGG CGGCCTGATC
GGCTTCTTCG GCCTGTGGCT GATCTCCATC GGCGGGGTCA ACACGATGAT CGTCGGCTGG
TGCCTGACTC AGCTCGGCAT GAACGCCGTG GCCGCCGCCC TGATGGCCCT GCTGCCCGAC
CAGATCCCCG AAGGTCAGCG CGGCATGGTC AGCGGCGCGA TCGGCATGTG CGTGCCAGCG
GGCATCATTT CCGGCTTCGC CCTCGTCAAC GCGGCGCAGG GCCATGCGCA GCTGATGTTC
CTGCTCGCGC CGGCCATCCT GCTGGTGACG ATCGCGATGC TGTGCATGTC CTATACCGAC
AAGGTCACCG ATCCGGCAAC CGTCGCGCCC TTCAGCCTGG GCCAGATGCT GCGGGATTTC
GCGTTCAACC CGATGGCCTT TCCCGACTTC ACCTGGGCTT TCCTGAGCCG CCTGTTCTTC
TTCTTCGCGT TGGCGACTTT CCTGGGTTAT CAGGTGTTTT TCCTGATGGA CCGCCTGGGC
TACAGCGCCG CTGAAGTGCC CGGCATCATG GTGAAGGTCA ACCTGATCGC CTCGGCCATC
CAGATCGCGA GCAGTTTCCT GTCCGGCTGG CTGTCGGACA TCATCGGCCG GCGCAAGATC
TTCATCTGGA CCTCGGCGGT GCTCTACGGT GTCGGCCTGC TGATCATCGC CCGGGCGACG
AACTACGACG CCTTCCTGCT GGGCGCCTGC GTCATGAGCC TGTCCTTCGG CGTGTACTTC
GCGGTGGACG TCGCGCTGGT CACCGAAGTC CTGCCGGACG CGAAGAACAA CGCGGCCAAG
GATCTCGGCG TCATGAACGT GGCGGGAACC CTGCCGCAGA CACTGGCACC CGCCATTGCC
CCGCTGTTCC TGTTCGCCGG TGGACAGACC ACGCCGGACT ACAGCGTGCT CTTCACGGCC
GCTGCGGTGT ACGCCGTGCT CGGCGCGGTC ACGATCATTC CGATCCGCAA GGTGCGCTGA
|
|---|
| Protein sequence | MTTLTSPAHA SSPHASWALI FTIVLAYWAL TMALLTPPMM TIALRVAEIA PQNKESTLGL
LLGIGAIVAI FANPVAGYFS DRTVTRFGRR KSWMVAGGLI GFFGLWLISI GGVNTMIVGW
CLTQLGMNAV AAALMALLPD QIPEGQRGMV SGAIGMCVPA GIISGFALVN AAQGHAQLMF
LLAPAILLVT IAMLCMSYTD KVTDPATVAP FSLGQMLRDF AFNPMAFPDF TWAFLSRLFF
FFALATFLGY QVFFLMDRLG YSAAEVPGIM VKVNLIASAI QIASSFLSGW LSDIIGRRKI
FIWTSAVLYG VGLLIIARAT NYDAFLLGAC VMSLSFGVYF AVDVALVTEV LPDAKNNAAK
DLGVMNVAGT LPQTLAPAIA PLFLFAGGQT TPDYSVLFTA AAVYAVLGAV TIIPIRKVR
|
|---|
| |