Gene Lcho_0788 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0788 
Symbol 
ID6160732 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp850256 
End bp850888 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content70% 
IMG OID641663538 
ProductNADP oxidoreductase coenzyme F420-dependent 
Protein accessionYP_001789825 
Protein GI171057476 
COG category[R] General function prediction only 
COG ID[COG2085] Predicted dinucleotide-binding enzymes 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.0210112 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGATCA CCGTTCTCGG CGCCGGCAAC ATGGGCTCAG CATTCGTCCA GCAACTCACC 
CGCGCCGGTC ACCAAGTCAG CGTCACGGCG CGTGATGGCG CCAAGGCGGC GGCCGTCGCC 
GCGAAGTTTC CCGGCGCGAT GGCCGTGCCG ACCGCCGGCG CTGCAGTCGG TGCCGATGCA 
GTCGTGCTGG CCACCGGCTA CGGCGACGCC GTGGCGGCGC TCACGTCGCT GGGCGATCTG 
ACGGGCAAGG TCATCATCGA CATCACCAAC CCGCTGACGG CCGACTACAT GGGCCTGACG 
ATCGGCCACG ACACCTCGGC CGCCGAGCAG ATTGCCGCAG CCGTGCCGGG CGCACAGGTC 
GTCAAGGGCT TCAACACCGT GTTCGCGCAG GTGCTCACCG AAGGGCCGGA CTTCGGCAAC 
GGCCGCAAGG CCAGCGTCTT CGTCGCCAGC GACAGTGCAC AGGCCAAGCA GACCGCGGCC 
GCCATCGCCG AGAGCCTCGG CTTCGAGGTC GTCGATGCCG GCGGCCTGAA GAACGCGCGC 
TACCTGGAGC CGCTGGCCGG CCTGAACATC TACCTCGGCT ACGGCGCCGG GCTGGGCACG 
GCGATTGCGC CGACCTGGCT GCGCAAGGCC TGA
 
Protein sequence
MKITVLGAGN MGSAFVQQLT RAGHQVSVTA RDGAKAAAVA AKFPGAMAVP TAGAAVGADA 
VVLATGYGDA VAALTSLGDL TGKVIIDITN PLTADYMGLT IGHDTSAAEQ IAAAVPGAQV 
VKGFNTVFAQ VLTEGPDFGN GRKASVFVAS DSAQAKQTAA AIAESLGFEV VDAGGLKNAR 
YLEPLAGLNI YLGYGAGLGT AIAPTWLRKA