| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0758 |
|---|
| Symbol | |
|---|
| ID | 6163027 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 814921 |
|---|
| End bp | 816264 |
|---|
| Gene Length | 1344 bp |
|---|
| Protein Length | 447 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641663508 |
|---|
| Product | recombination factor protein RarA |
|---|
| Protein accession | YP_001789796 |
|---|
| Protein GI | 171057447 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2256] ATPase related to the helicase subunit of the Holliday junction resolvase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0000599835 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGACC TGTTCGACGC CCACCCCGCG CCGCCGCAGC CGGCCGGCGC AGCGGCCGCG
CGCCCGGCCT ACGCGCCGCT GGCCGAGCGC CTGCGTCCGC GCACGCTCGA CGAGGTGATC
GGCCAGTACG ACCTGCTCGA CGCCGGCAAG CCGCTGCGGG TGGCGTTCGA ATCGCGCCAG
CCGCATTCGA TGATCCTGTG GGGCCCGCCG GGTGTGGGCA AGACCACGCT GGCGCGGCTG
ATGGCCGATG CCTTCGACGC CCAGTTCGTG CAGATCTCGG CGGTGCTGGG TGGCGTCAAG
GAGATCCGCG AGGCGGTCGA GCAGGCGCGG GTGGCGCAGG CACAGGGGCG GCGCTGCATC
GTCTTCGTCG ACGAGGTGCA CCGCTTCAAC AAGTCGCAGC AGGACGCGTT TCTGCCGCAT
GTCGAGTCGG GCCTGTTCAC CTTCATCGGC GCGACCACCG AGAACCCGTC GTTCGAGGTC
AACTCGGCGC TGCTCTCGCG TGCCACCGTG CACGTGCTGC AGCCGATCGG CGAGGACGAC
CTGCGCCTGC TGCTCGAGCG CGCCTGCGCC ACGCTGGCCG CGCTGGCGCC GCAGGCGAGC
GCCGTGACGC GGCTGATCGC CTATGCCGAT GGCGACGCGC GGCGCCTGCT CAACACCTAC
GAAAACGTCG TGCAGATGGT CGGCCCCGGC GCGGTGATCG ACGAGGCCGT GCTCGAGCGC
TGCCTGGGCG CCCAGCTGCG CCGCTACGAC AAGGGCGGCG AGCAGTTCTA CGACACCATC
TCGGCGCTGC ACAAGTCGGT GCGCGGCAGC GATCCGGATG CGGCGCTGTA CTGGTTCGTG
CGCATGCTCG ATGGCGGCGT CGATGCGCGC TACATCGTGC GCCGGCTGGT CCGCATGGCC
AGCGAGGACA TCGGCCTGGC CGACCCGCGT GCGCTGCGCC TGTGCCTCGA CGCCGCCGAG
ACCTACGAGC GACTGGGCTC GCCCGAGGGC GAACTGGCGC TGGCCGAGGC GGTGGTCTAC
CTGGCGGTGG CGCCCAAGTC GAACGCGGTC TACACGGCGT ACAAGGCCGC CCGCGCCTTC
GTGCAGAAGG ACGGCACCCG CGCGGTGCCC CTGCACCTGC GCAATGCGCC GACCGCGCTG
ATGAAGCAGC TCGACTACGG CCGCGACTAC CGCTACGCCC ACGACGAGGC CGATGCCTAT
GCGGCCGGCG AGCGCTACTT CCCGGATGCG CTCGATCCGC CGCCGCGTTT TTACGAGCCG
GCGCCGCGCG GGCTCGAGAT CAAGATCGGC GACAAGCTGG CGCAATTGCG CGAGCGCGAC
GCGCAGGCGA AGAAAGCTCG CTGA
|
|---|
| Protein sequence | MSDLFDAHPA PPQPAGAAAA RPAYAPLAER LRPRTLDEVI GQYDLLDAGK PLRVAFESRQ
PHSMILWGPP GVGKTTLARL MADAFDAQFV QISAVLGGVK EIREAVEQAR VAQAQGRRCI
VFVDEVHRFN KSQQDAFLPH VESGLFTFIG ATTENPSFEV NSALLSRATV HVLQPIGEDD
LRLLLERACA TLAALAPQAS AVTRLIAYAD GDARRLLNTY ENVVQMVGPG AVIDEAVLER
CLGAQLRRYD KGGEQFYDTI SALHKSVRGS DPDAALYWFV RMLDGGVDAR YIVRRLVRMA
SEDIGLADPR ALRLCLDAAE TYERLGSPEG ELALAEAVVY LAVAPKSNAV YTAYKAARAF
VQKDGTRAVP LHLRNAPTAL MKQLDYGRDY RYAHDEADAY AAGERYFPDA LDPPPRFYEP
APRGLEIKIG DKLAQLRERD AQAKKAR
|
|---|
| |