| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0747 |
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| Symbol | |
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| ID | 6161315 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 796284 |
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| End bp | 801080 |
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| Gene Length | 4797 bp |
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| Protein Length | 1598 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641663497 |
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| Product | outer membrane adhesin like proteiin |
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| Protein accession | YP_001789785 |
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| Protein GI | 171057436 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
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| TIGRFAM ID | [TIGR01965] VCBS repeat
[TIGR03661] type 1 secretion C-terminal target domain (VC_A0849 subclass) |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.525894 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGACG CTCCTGCTGT CCAGCAAACA GTCACCCCTC CCCCCAGCCC CGACCACCAG
CTGGCCGGCG CCCGATTGCA GGCCGCCTAC GCCCCGGCAC GCCTGCCCGC GGGCACGGTG
TCCAACGTCT GGGGCGCGGC CGTGCGCCGC AACGCCGACG GCGAGCTGCA CGCCCTGCAG
CCCGGCGACA TCGTGCGCAG CGGCGACGTC ATCCTGACGA CGCAGGACGG CATCGTCGAA
ATCACCGTCG GCCGCCAGCT CTCGGTGCGA CTGCCACCGC CCGACGAGAC ACCGCCCCCC
ACCGCCACGC CCGCCTCGGA CGCGGACAAC AGCGCCGAAC TGGTGTTCGA CGCGCCCGGC
GCCGGCCTCG CGGGCGGCAG CGACAGCGGC GGCCTGCAGG CGGCAGAGCG GGTCGAGCGC
ATCGTCGAGG TGGTCACGCC GCAGCAGTAC CTCTACGACC TGGCGATGGC GCACGGCGAT
GCCGGCCCGT TCGCGACGAC CGCCCCGGCG GCCCAGGCGC CGGCAGCCGA TCCCGACCCG
ACCGCGGCCG ACACGTCGAC CGCCCAGCCC CACATCGGCG GCACCGGCGA GGCGGCAGCA
ACCCGGGTCC GTATCAGCGG CCCGGGCTCG GTGATCGAAG GCCAGGTCTC ATCCGACTAC
ACCGTCACGC TGAGCCAGCC GGCGCAGGCC GACACCACCG TCACGCTCGC CTACGCCGGC
AGCGCCACCA GCGGCGCCGA CTTCCAGCCC GTGCTCGTCG TCACGATCCC CGCCGGCGCC
AGCAGCGCGA GCTTCCAGCT GCCGGTGATG GCTGACGCGG CCGTCGAAGG CAGCGAAACC
ATCACCGTCA GCCTCGCCTC CGTCAGCGGC GGCACCGGCC CGATCACCAT CGACGGCACC
GCCAACGCCG TCACCACGCA GATCGTCGAC GGCACCGTGG CTCCGGCACC TGAACCCAGC
CCGGCACCAG CTCCAGCTCC AGAGCCTCCC GCAGAGCCCG CTCCTGCGCC CACCCCGGCC
CCCGCGCCAG TGCCCACTCC AGCTCCAGCG CCAGCACCGG CTCCAGCGCC AGCACCGGCT
CCAGTGCCGG CACCCGCTCC AGAGCCTCCC GCAGAGCCCG CTCCAGCTCC AGCTCCAGCT
CCCATCCCAA CGGCGCCAGA ACCGGCACCT GCGCCGTCCC CGGCGCCCGA GCCGCCGCCT
TCGCCCGCTC CGGCGGAAGC GGCGATCCTG TCGATTTCCG GGCCGGGCTC GGTGGTCGAG
GGCGAGCTGG CGTCGGGCTA CACGGTGACG CTCGACACGC CGGCGGCCAC CGACATGACG
GTCTGGCTGG CGTTTTCCGG GTCGGCGACC GGTGGCGTCG ACTACGCGCA CCAGTTCGTT
TCGGTCACCA TCCAGGCGGG AGCTCGTGCG GCGACGTTCG ATCTGAGCAC GATCGACGAC
GCCTACGCGG AAGGCACGGA AACCCTCGTC GTGTCGATCG CCGGCTCGAA CGGCGGCGGC
TTCGCGAACG TGGCGATCTC GTCGAGCGCG GGCTCGGTGA CGACGATGCT GATGGACGAC
GTCGTGCCGT CCGGCCCGCC AGGTCCGGGC CCAGGCACCG CGCCGGGCCC GGAGGACACC
GCGACGCTGT CGATCTCGGG GCCGGGCACG GTGATCGAGG GTCATGTGAC GGCGGACTAC
ACGGTCACGC TCGACAAGGC CGCCGCCACC GACATGACCG TGCGGCTGAG CTACGCCGGC
ACGGCCACCG ACGGCGCCGA CTACGTGGGC GCGGTCGTGG AGATCACGAT CAAGGCCGGC
TCGACCTCGG CCACCGTGGC GCTGTCGGCA CTGAACGACC ACGCGGTCGA GGGCACCGAG
TCGGTGATCG TCTCGATCGC CGGCACCTCG GGCGGCGGCT TCGAGAACGT GGTGATCGCG
TCGGGCGCAG GCTCGGTCGG CACGCAGATC ATCGACGGCG CCTTGCCCGT GATCGGCGGC
CAGCTGAGCG CGCAGGTGTC CGAAGAAGGC CTGGCCGGCG GCCAGGCCGA TGACGTCGGC
GCACACCCCG GTGACGACAG CACCGACGCG CGCAGCTTCA GCGGCCAGCT GAGCTTCAGC
GACGCCGACA GCGCACAGCT GAGCGTGACG CTGAGTGCCC CGCCGGACGC GCTGAGTTCG
GGCGGGCAGG CGATCGTCTG GACCGGCGAC GGCAGCACCA CGCTGGTCGG CCACGTCGGC
ACGGCCGACG GCGCCGAGGC GCTGCGCGTC AGCATCGACG CCGGCGGCGC CTACGAGGTG
ACGCTGTCGC GCCCGCTCGA CCACGGCGCG GCCGGCGAAG ATCGACTCTC GCTCGGCGTG
GGCGTGCACC TGAGCGACGG CGTGCACGGC CGCGACGCGA CGATCGAACT GCAGATCGAC
GACGACGCGC CGCTGGCCCG CAACGACAGC GTCAGTGCCA CGGCGGCGCG CACCAACCTG
CTGATCAGCC TCGACGTGTC GGGCAGCATG GACACCGCCG ACGGCGTGGC CGGCGCGACC
CGGCTGGCCA GCGCGATCGA GGCGATCGGC CAGCTGCTCG ACCGCCACGA GGCGATGGGC
GATGTGGCCG TGCGGCTGGT GACGTTCTCG TCGACCGCGC AGGCCATCGG CGAGGTCTGG
ACCGACGTGG CCACGGCCCG GCAGCTGCTC GCCAGTCTGC AGGCCGACGG CGGCACGCAC
TACGACTCGG CGCTGGCGGC AGCGCAGAGC GCCTTCCTGA GCGCCGGCAG ACTGGCGGGC
GCGCAGAACG TCAGCTACTT CCTGTCGGAC GGCGAGCCCA ACCGCGGCCA CGGGATCGAC
AGCGCCGAGC AGCGGCAGTG GGAGTCCTTC GTCACCAGCC AGGCGATCGA CAGCCGCGCG
ATCGGCCTGG GTGACAGCAC GACGCAGGCC AGCATGGACG GCATCGCCTA CGACGGCAGC
AGCGGGCACG ACACCGACGC GCTGCGGGTG AGCGACTTCA ACCAGCTCGA CGCAGTGCTG
AGCACCCCGG TGCAGGCGCC GGTCAGCGGC CAGCTGATCG CCGGCGGCGG CGCCGACGGG
GCGCGCATCG CGTCGATCAC GATCGACGGC GTGACCTACA CCTACCACCC CGGGCCACCG
GGCAGCGTCG GCGTGCAGGC GGGCACCGGA ACGAACGCCG GCAGCCATGA CGCGCAGACC
GGCGTGCTGA GCGTGGCGCT GGCGCACGGC GGCAGCCTGG CGGTGCAGCT CGACAGCGGC
GCCTACACCT TCAGCCCGGG CGCCGAGGCG GGTCGCACCG ACGTGCGGTT CACGCTGATC
GACGGCGATG GCGACACCGC CGACGGCACG CTCGGGCTCG ACGTGGTGCG GCCGCCGGAC
CAGGCGGCCG TGATCGGCGG CGTCGACCAC GGCGACGTGA CCGAAGCGGG CAGCCTCACC
GCCAGCAACG GTTGCGACCG CGACCATGAC AGCAGCCGTT CGTCAGCCAG CAGCACGCAC
GGCCAGCTCA GCGTGCACGA CGGCGACGGG CCCGCGCAGG CCCGGTTCCA GCCGGTCGGC
AGCGGCGCCA GCACCCTCGG CCTGGGCCAG TACGGCATCG ACGCCAGCGG CCGCTGGACG
TACACGCTCG ACAACGGCCA CCCGAAGGTC GACGCGCTCG CCCCGGGCCA GACGCTGACC
GACCGCTTCG TCGTGCACAG CGCCGACGGC ACCGCGCAGA CCGTGACGAT CACGATCCAC
GGCAGCAACG ACGCACCGAC CGTGCGCGCC AGCGGCGGGG GCGGCCTGCT GGGCCTGATC
GATGCCAACG TGCTCGACAT CCTCGACTTC GGCCGCCAGC AGGCCTTCGG CGCCCACGAT
GTCGACGGCG ACCTGAAGCA GGTCGAGCTG CATTACGACA GCGGCCTGCT CGGCAAGCTG
ACGAGCCTCG TCACCACCAC CCACCACTTC GCCTATGACG TGCGGCTGGC CGCCGAACTG
GGCCTGCAGG TGCTCGAGAA CACCACGCCA GCGCAAACCG GCGGCTTGCT CGGCACGCTC
GGCGGCCTGC TGTGCAGCAA CGAGTCGACG CTGACCATCA CCGCAGCCGA CGGCGGCACG
CTGAGCAACC CGCTGATCAA CGAGTTCCTG GCCAGCGTGC ACCTCGAGAA CAGCGGCGGC
CTGCTCGGCG ATGCGGTCAA CGCCAAGCTG CTGTCGGCCA CCACGCTGAC GGCCACCGAC
AGCGCCGGCG CCACCGCGCA GGCGAATGTC GGCAGCCTGC TGACGGTCGA CGTGCTGGCC
GCCGAGGCGC AGACCACGGT CACGACCGAC AGCACGAGCG GCGGCCATGC CCTGGACGGC
AGCACGGGCA GCGACCGGCT CTACGGCCTC GATGGCGACG ACACCCTCGC CGGCGGCGCC
GGCGCCGACC TGCTGCGCGG CGGCAGCGGC GACGACGTGC TGGCCGGCGG CCTGGGCGCC
GATGTGCTCC GGTGGCACCT GGCGGACGCC GGCAGCGCCG CCAGCCCGGC ACGGGACCGC
ATCGCGGACT TCGACGTCGG CACACCCGCC AACGGCGGCG ACCTGCTCGA CCTGCGCGAC
CTGCTGCTCG GCGAGCAGCA CTTCGGCAAC GACGTCGGCA ACCTGGCGGA CTTCCTCGAC
TTCAAGCTCG ACAGCAGCGG CCAGTCGACC CTCCTCGAGG TGCGATCGCA GGGCGCGACC
GGGCCGGTCG ATCAGGTGAT CGAGTTCACC GGCGTCGACC TGATTGGCGC TGCCGGCGGC
GATCAGCAGC AGGTGATCCA GCACCTGCTA CAAAGCGGCA AGCTGATCAC CGACTGA
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| Protein sequence | MSDAPAVQQT VTPPPSPDHQ LAGARLQAAY APARLPAGTV SNVWGAAVRR NADGELHALQ
PGDIVRSGDV ILTTQDGIVE ITVGRQLSVR LPPPDETPPP TATPASDADN SAELVFDAPG
AGLAGGSDSG GLQAAERVER IVEVVTPQQY LYDLAMAHGD AGPFATTAPA AQAPAADPDP
TAADTSTAQP HIGGTGEAAA TRVRISGPGS VIEGQVSSDY TVTLSQPAQA DTTVTLAYAG
SATSGADFQP VLVVTIPAGA SSASFQLPVM ADAAVEGSET ITVSLASVSG GTGPITIDGT
ANAVTTQIVD GTVAPAPEPS PAPAPAPEPP AEPAPAPTPA PAPVPTPAPA PAPAPAPAPA
PVPAPAPEPP AEPAPAPAPA PIPTAPEPAP APSPAPEPPP SPAPAEAAIL SISGPGSVVE
GELASGYTVT LDTPAATDMT VWLAFSGSAT GGVDYAHQFV SVTIQAGARA ATFDLSTIDD
AYAEGTETLV VSIAGSNGGG FANVAISSSA GSVTTMLMDD VVPSGPPGPG PGTAPGPEDT
ATLSISGPGT VIEGHVTADY TVTLDKAAAT DMTVRLSYAG TATDGADYVG AVVEITIKAG
STSATVALSA LNDHAVEGTE SVIVSIAGTS GGGFENVVIA SGAGSVGTQI IDGALPVIGG
QLSAQVSEEG LAGGQADDVG AHPGDDSTDA RSFSGQLSFS DADSAQLSVT LSAPPDALSS
GGQAIVWTGD GSTTLVGHVG TADGAEALRV SIDAGGAYEV TLSRPLDHGA AGEDRLSLGV
GVHLSDGVHG RDATIELQID DDAPLARNDS VSATAARTNL LISLDVSGSM DTADGVAGAT
RLASAIEAIG QLLDRHEAMG DVAVRLVTFS STAQAIGEVW TDVATARQLL ASLQADGGTH
YDSALAAAQS AFLSAGRLAG AQNVSYFLSD GEPNRGHGID SAEQRQWESF VTSQAIDSRA
IGLGDSTTQA SMDGIAYDGS SGHDTDALRV SDFNQLDAVL STPVQAPVSG QLIAGGGADG
ARIASITIDG VTYTYHPGPP GSVGVQAGTG TNAGSHDAQT GVLSVALAHG GSLAVQLDSG
AYTFSPGAEA GRTDVRFTLI DGDGDTADGT LGLDVVRPPD QAAVIGGVDH GDVTEAGSLT
ASNGCDRDHD SSRSSASSTH GQLSVHDGDG PAQARFQPVG SGASTLGLGQ YGIDASGRWT
YTLDNGHPKV DALAPGQTLT DRFVVHSADG TAQTVTITIH GSNDAPTVRA SGGGGLLGLI
DANVLDILDF GRQQAFGAHD VDGDLKQVEL HYDSGLLGKL TSLVTTTHHF AYDVRLAAEL
GLQVLENTTP AQTGGLLGTL GGLLCSNEST LTITAADGGT LSNPLINEFL ASVHLENSGG
LLGDAVNAKL LSATTLTATD SAGATAQANV GSLLTVDVLA AEAQTTVTTD STSGGHALDG
STGSDRLYGL DGDDTLAGGA GADLLRGGSG DDVLAGGLGA DVLRWHLADA GSAASPARDR
IADFDVGTPA NGGDLLDLRD LLLGEQHFGN DVGNLADFLD FKLDSSGQST LLEVRSQGAT
GPVDQVIEFT GVDLIGAAGG DQQQVIQHLL QSGKLITD
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