| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0745 |
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| Symbol | |
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| ID | 6161313 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 792159 |
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| End bp | 794918 |
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| Gene Length | 2760 bp |
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| Protein Length | 919 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641663495 |
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| Product | preprotein translocase, SecA subunit |
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| Protein accession | YP_001789783 |
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| Protein GI | 171057434 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0653] Preprotein translocase subunit SecA (ATPase, RNA helicase) |
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| TIGRFAM ID | [TIGR00963] preprotein translocase, SecA subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.864781 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGCCCA AGCTCTTGAC CTCGATTTTC GGCAGCCGCA ATGAGCGTCT GCTCAAGCAA
TACCGGCGGG TGGTGGAGCG CATCAACGCG CTCGAAGTGC AGTTCGAGAC CCTCGGCGAC
GACGAGTTGC GCGGCAAGAC CGCCGAGTTC CGCCAGCGCA TCGCCGCCGG CACCACGCTC
GACGACCTGC TGCCCGAGGC CTACGCGGTG GTGCGCGAAG GTGGCAAGCG CGCCCTCAAG
ATGCGCCACT TCGACGTCCA GCTGATCGGC GGCATGACCC TGCACAACGG CAAGATCGCC
GAGATGCGCA CCGGCGAAGG CAAGACGCTG ATGGCGACGC TGCCGGTTTA TCTGAATGCG
CTGACCGGCA AGGGCGTGCA CGTGGTCACC GTCAACGACT ACCTGGCCCG CCGCGACGCC
GAGTGGATGG CCCGGCTCTA CAACTTCCTC GGCATGACGG TGGGCATCAA CCTGCCCAAC
ATGAGCCGCG AGGAAAAGCA GGCCGCCTAC GCCGCTGACA TCACTTACGG CACCAACAAC
GAATACGGCT TCGATTACCT GCGCGACAAC ATGGTCTACG AGGTGGTCGA CCGGGTGCAG
CGCCCGCTCA ACTACGCCAT CGTCGACGAG GTCGACTCGA TCCTGATCGA CGAGGCCCGC
ACGCCGCTCA TCATCAGCGG CCAGGCCGAG GACCAGACCG ACCTCTACCT GCGCATCAAC
GCTGTCATTC CGCAACTCGC CAAGCAGATC GGCGAAGCCG ATCCGCGTAC CGGCGAGGGC
GTGATCCAGG CCGGCGACTT CACCGCCGAC GAGAAGACCC ACCAGGTCTT CCTGACCGAG
GACGGCCACG AGAAGGCCGA GTCGCTGCTG GCGCAGGCCG GCCTGCTGGC CGAAGGCGCG
TCGCTCTACG ATGCCGCCAA CATCACGCTG GTGCACCACC TGTACGCCTC GCTGCGCGCG
CACCACCTGT TCCACCGCGA CCAGCATTAC GTGGTGCAGA ACGGCGAGGT CATCATCGTC
GACGAGTTCA CCGGCCGGCT GATGAGCGGG CGGCGCTGGA GCGACGGCCT GCACCAGGCG
GTCGAGGCCA AGGAAGGCGT GAACATCCAG GCCGAGAACC AGACGCTGGC CTCGATCACC
TTCCAGAACT ACTTCCGCAT GTACGCCAAG CTCGGCGGCA TGACCGGCAC GGCCGACACC
GAGGCCTACG AGTTCCAGGA GATCTACGGC CTCGAGACCG TGGTGATCCC GCCCAACCGC
CCGACCATCC GCCGCGACGA ACTCGACCTG GTCTACAAGA CCGACCGCGA GAAGTACGAC
GCCGTCACCG CCGACATCCG CGAGTGCTAC GAGCGTGGCC AGCCGGTGCT GGTGGGCACG
ACCTCGATCG AGAACTCCGA GCGCGTTTCC GAGCTGCTGA ACAAGGCCGG GCTGCCGCAC
CAGGTGCTCA ACGCCAAGCA GCATGCCCGC GAGGCCGAGA TCATCGCCCA GGCCGGACGG
CCGAAGATGG TGACGATCGC CACCAACATG GCCGGCCGCG GCACCGACAT CGTGCTGGGC
GGCAACGTCG AGAAGCAGGT GCAGCTGCTG GAGGCCGACG CGTCGGTGCC CGAGGTCGAC
AAGGCCGCGC GCATCCAGAC GCTCAAGGAC GAGTGGCAGG GCCTGCACGA GCAGGTCGTG
GCGCTGGGCG GCCTGCGCAT CATCGCCACC GAACGCCACG AGAGCCGCCG CATCGACAAC
CAGCTGCGCG GCCGCGCCGG CCGCCAGGGC GACCCGGGCA GCTCGCGCTT CTACCTGTCG
CTGGAGGATT CGCTGATGCG CATCTTCGCC GGCGACCGCG TCAAGGCGAT CATGGAGCGC
CTGAAGATGC CCGACGGCGA GGCGATCGAG GCCGGCATCG TCACGCGCAG CATCGAGAGC
GCGCAGCGCA AGGTCGAGGC GCGCAACTTC GACGTGCGCA AGCAGCTGCT CGAATACGAC
GATGTCAGCA ACGACCAGCG CAAGGTCATC TACTCGCAGC GCAACGAGAT CCTCGAGCAG
ACCGACGTCG ACGCCCAGAT CGCCCACCTG CGCCGCGGCG CGATGACCGA CGTCGTGCGC
ACCTACGTGC CGGCCGAGAG CGTCGAGGAA CAGTGGGAAC TCGCCACGCT CGAATCGACG
CTGCGCGACG AATGGCAGCT CGACGTGCCG CTGCGGGCGG TGGTCGACAA GAGCGACGCG
ATGTCCGACG AGGACGTCGT CGAGCGCGTG GTCACCGCCG CCAACGATGC CTTCGACGCC
AAGCTGGCGC AGGTCGGCCG CGAGCAGTTC GCCAGCTTCG AACGCATGAT CCTGCTGCAG
TCGATCGACA CCCACTGGCG CGAGCACCTG GCCGCGCTCG ACTACCTGCG CCAGGGCATC
CACCTGCGCG GCTACGCGCA GAAGAACCCG AAGCAGGAAT ACAAGCGCGA GGCCTTCGAG
CTCTTCAGCC AGCTGCTCGA CCGCGTCAAG CTCGACGTCA CGCGGGTGCT GATGACCGTG
CGCATCCAGA GCCGCGAAGA GGCCGCCCAG GCCGCCGAGG CGATCGAGGT GCGTGCCGAG
CAGATCAGCA ACGTGACCTA CACGCACCCG AACGAGGACG GCAGCGTCTC GCAGGATGCG
GCGGCGGCAT CGGCGGCCGA AGGCCTGCCG CTGCAGCAGG GCCTGCGTGT CGGCCGCAAC
GACCCGTGCC CTTGCGGCAG CGGCAAGAAA TACAAGCAGT GCCACGGCAA GCTGGCTTGA
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| Protein sequence | MLPKLLTSIF GSRNERLLKQ YRRVVERINA LEVQFETLGD DELRGKTAEF RQRIAAGTTL
DDLLPEAYAV VREGGKRALK MRHFDVQLIG GMTLHNGKIA EMRTGEGKTL MATLPVYLNA
LTGKGVHVVT VNDYLARRDA EWMARLYNFL GMTVGINLPN MSREEKQAAY AADITYGTNN
EYGFDYLRDN MVYEVVDRVQ RPLNYAIVDE VDSILIDEAR TPLIISGQAE DQTDLYLRIN
AVIPQLAKQI GEADPRTGEG VIQAGDFTAD EKTHQVFLTE DGHEKAESLL AQAGLLAEGA
SLYDAANITL VHHLYASLRA HHLFHRDQHY VVQNGEVIIV DEFTGRLMSG RRWSDGLHQA
VEAKEGVNIQ AENQTLASIT FQNYFRMYAK LGGMTGTADT EAYEFQEIYG LETVVIPPNR
PTIRRDELDL VYKTDREKYD AVTADIRECY ERGQPVLVGT TSIENSERVS ELLNKAGLPH
QVLNAKQHAR EAEIIAQAGR PKMVTIATNM AGRGTDIVLG GNVEKQVQLL EADASVPEVD
KAARIQTLKD EWQGLHEQVV ALGGLRIIAT ERHESRRIDN QLRGRAGRQG DPGSSRFYLS
LEDSLMRIFA GDRVKAIMER LKMPDGEAIE AGIVTRSIES AQRKVEARNF DVRKQLLEYD
DVSNDQRKVI YSQRNEILEQ TDVDAQIAHL RRGAMTDVVR TYVPAESVEE QWELATLEST
LRDEWQLDVP LRAVVDKSDA MSDEDVVERV VTAANDAFDA KLAQVGREQF ASFERMILLQ
SIDTHWREHL AALDYLRQGI HLRGYAQKNP KQEYKREAFE LFSQLLDRVK LDVTRVLMTV
RIQSREEAAQ AAEAIEVRAE QISNVTYTHP NEDGSVSQDA AAASAAEGLP LQQGLRVGRN
DPCPCGSGKK YKQCHGKLA
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