Gene Lcho_0701 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0701 
Symbol 
ID6163433 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp750124 
End bp750783 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content68% 
IMG OID641663453 
Productchemoreceptor glutamine deamidase CheD 
Protein accessionYP_001789741 
Protein GI171057392 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG1871] Chemotaxis protein; stimulates methylation of MCP proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value0.376029 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGATCT CGACCGCTCC CAAGACCTCG CCGCCGCGCA GCAGCCGCAT CGACAAGCTG 
CGCGCGCAGC CGCGCAAGCC CGGCGAGGCC TCGTTCTTCT TCTACGACGC CTTTTTCAAG 
GCCGACGCCG TCAAGGTGCT GCCGGGCGAA TATTTCGTCG ACAACGAGGA CACGCTGATC 
CTGACCACGC TGGGCTCGTG CATCGCCGCC TGCCTGTGGG ACCGGGTGGC GCGGGTGGGC 
GGCATGAACC ACTTCATGCT GCCCGACGTC GGCAGCGGTG CGATCGACGG CGGCCGCTAT 
GGCTCGTACG CGATGGAACT GCTCATCAAC GAACTGCAGA AACGCGGCGC CAACCGGTCC 
ACGCTGGAGG CCAAGGTGTT CGGCGGCGGC GCCGTGATCG GCGGCATGAG CAGCCTCAAC 
GTCGGCGAGC GCAACACCCA GTTCGTGCTC GACTACCTGC GCACCGAGCG CATCCCGGTG 
GTCTCGAAGG ACGTGCTGGA GATCTATCCG CGCAAGGTCT GCTTCTTCCC GGCCAGCGGC 
AAGGCGATGG TCAAGCGCCT GGCGCCGACC AACACCGACG CGGTGGCCGC GCTCGACCGC 
GATGCGGCGC AGAAGGCGCG CAGCAGCAGC AGCGTCGGCG GCAGCGTCGA CCTGTTCTGA
 
Protein sequence
MSISTAPKTS PPRSSRIDKL RAQPRKPGEA SFFFYDAFFK ADAVKVLPGE YFVDNEDTLI 
LTTLGSCIAA CLWDRVARVG GMNHFMLPDV GSGAIDGGRY GSYAMELLIN ELQKRGANRS 
TLEAKVFGGG AVIGGMSSLN VGERNTQFVL DYLRTERIPV VSKDVLEIYP RKVCFFPASG 
KAMVKRLAPT NTDAVAALDR DAAQKARSSS SVGGSVDLF