Gene Lcho_0699 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0699 
Symbol 
ID6163431 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp748145 
End bp748825 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content69% 
IMG OID641663451 
Productdiguanylate cyclase 
Protein accessionYP_001789739 
Protein GI171057390 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value0.642785 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCGACC GTGCAGGTCA TTCATTCCCC GAGTCGGCCG CCGCCGGGTC GCCCGCCTGG 
CTGCAAAGCC TCATCGATGG CCTGTGCACG CTCTCCAGCC GCGACCCGCT CACCGGCCTG 
CCCAATCGCC GCCAGTTCGA GGCGGCGCTC GAGCAGGAGA TCGACCGCGT CGCGCGCTCG 
GGCGAACCGG CGATGCTGCT GATGCTCGAC ATCGACCACT TCAAGCACAT CAACGACACC 
CACGGCCATG CCGTCGGCGA CCTGGTGATC CAGGCCGTCG GCGCCGCCCT GGAAGACAGC 
GTGCGGCCGA TGGACAGCGT GGCGCGCATC GGCGGCGAAG AGTTTGCCGC GGTGCTGCCG 
AGCTGCCCGG CCGCTTTCGG CCACACGGTG GCCGAGCGCG TGCGACGCAA CATCGAGGCC 
CTGCGCATCG CCATCGCGCC GGGCCAGATC GTCACGGTGA CCACCAGCGT GGGCGGCGCC 
TTTGCACCGC AGTGGGTGCG CTCGTCAGGT CCGCTGTGGC TCGAACGGGC CGACCAGCAG 
CTCTACCGCG CCAAGTCCGA GGGCCGCAAC CGCACCTGTC TTGAATCCCC CCCGATATCC 
GAAGTGAGTG CAGAAGAGCG GGGCATGCTG TTTGGCGCAG CGCCGCCCCT CCTGCCGCAA 
GACAACGAGT CCGCGCCATG A
 
Protein sequence
MLDRAGHSFP ESAAAGSPAW LQSLIDGLCT LSSRDPLTGL PNRRQFEAAL EQEIDRVARS 
GEPAMLLMLD IDHFKHINDT HGHAVGDLVI QAVGAALEDS VRPMDSVARI GGEEFAAVLP 
SCPAAFGHTV AERVRRNIEA LRIAIAPGQI VTVTTSVGGA FAPQWVRSSG PLWLERADQQ 
LYRAKSEGRN RTCLESPPIS EVSAEERGML FGAAPPLLPQ DNESAP