Gene Lcho_0693 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0693 
SymbolispH 
ID6160820 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp743928 
End bp744911 
Gene Length984 bp 
Protein Length327 aa 
Translation table11 
GC content70% 
IMG OID641663445 
Product4-hydroxy-3-methylbut-2-enyl diphosphate reductase 
Protein accessionYP_001789733 
Protein GI171057384 
COG category[I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0761] Penicillin tolerance protein 
TIGRFAM ID[TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGCCG CCGATGGCGC CGCGCCGCAG GAAGTGCTGC TGGCCCAGCC GCGCGGCTTC 
TGCGCGGGGG TCGACCGTGC GATCGAGATC GTTGAGCGCG CCCTGACCCG CTTCGGCGCG 
CCGATCTACG TGCGCCACGA GATCGTGCAC AACACCTACG TCGTCAACGA CCTGAAGGCC 
AAGGGCGCGA TCTTCATCGA GGACCTGGCC GAGGTGCCAC CCGGCGCCAC GCTGGTGTTC 
AGCGCCCACG GCGTCAGCCA GGCGGTGCGC GCCGAAGCCA CCGAGCGCGG CTTCCAGATC 
TTCGACGCCA CCTGCCCGCT GGTCACCAAG GTGCACGTCG AGGTGGCCAA GATGCGCCGC 
GAGGGCTACG AGTTCATCAT GATCGGCCAC AAGGGACACC CCGAGGTCGA GGGCACGATG 
GGCCAGCTCG ACAGCGGCAT CCACCTGGTC GAGGACGTCG CCGACGTCGC GCAGGTGCAG 
CTGGCCGACC CGAGCCGGCT GGCGGTCGTC ACCCAGACCA CGCTCAGCGT CGACGACGCC 
GCCGAGATCC TGGCCGCGGT GAAGGCGCGC TTTCCGCAGG TGCGCGAACC CAAGCAGCAG 
GACATCTGCT ACGCCACGCA GAACCGCCAG GACGCGGTCA AGCTGCTGTC GGCCGAGGTC 
GACGTGCTGA TCGTGGTCGG CAGCCCCACC AGCTCCAACA GCAACCGGCT GCGCGAAGTG 
GCCGAGCGCC GCGGCACGCC GGCCTACATG GTCGACAACG CCGACGAGCT GCAAGGCGCC 
TGGTTCGACG GCCGTGCGCG GGTCGGCCTG ACCGCCGGCG CGTCGGCACC CGAGCTGCTG 
GTCCAGCAGG TGATCGAGCG GCTGCGCAGC TTCGGCGCGG TCAGCGTGCG CAAGATGCCC 
GGCGTCGAGG AGACGATCGA GTTTCCGCTG CCGATGGGCC TGGGCGACAA GTCGATGGCC 
GCCTCGGCGG CCTCGCGATC GTGA
 
Protein sequence
MAAADGAAPQ EVLLAQPRGF CAGVDRAIEI VERALTRFGA PIYVRHEIVH NTYVVNDLKA 
KGAIFIEDLA EVPPGATLVF SAHGVSQAVR AEATERGFQI FDATCPLVTK VHVEVAKMRR 
EGYEFIMIGH KGHPEVEGTM GQLDSGIHLV EDVADVAQVQ LADPSRLAVV TQTTLSVDDA 
AEILAAVKAR FPQVREPKQQ DICYATQNRQ DAVKLLSAEV DVLIVVGSPT SSNSNRLREV 
AERRGTPAYM VDNADELQGA WFDGRARVGL TAGASAPELL VQQVIERLRS FGAVSVRKMP 
GVEETIEFPL PMGLGDKSMA ASAASRS