Gene Lcho_0687 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0687 
Symbol 
ID6164095 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp738376 
End bp739101 
Gene Length726 bp 
Protein Length241 aa 
Translation table11 
GC content66% 
IMG OID641663438 
Producthypothetical protein 
Protein accessionYP_001789727 
Protein GI171057378 
COG category[S] Function unknown 
COG ID[COG3821] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.548428 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACTGGA CACTGCGCGT CATCACCCTC CTGCCACTGG CCGACTGGCT GGCGCTCGGC 
TGGTTTTTCA CCTGCTGGAT CGGCTATGTG AGCTTTGCGC GGCGCCGCGC CAGCGTCGAA 
GGTTCGCTGA TCGCGACATC CAACCAGTTT CGCAACCGCT GGATGACGCA GACCACGCTG 
CGCGAGAACC GCATGATCGA CGGCGTGGTG CTGCAGAACC TGTCGACCAG CCCGTCGTTC 
TTTGCCTCGA CGACGATCTT CATCATCGGC GGCCTGATCG CCGCGCTCGG CGCGACCGAG 
AAGACCAGCG AGCTGGTGCG TGAGCTGCCG TTCGCGGCAC GCACCTCGGC GCTGATCTTC 
GACCTCAAGC TGCTGCTGCT GGTGGGCATC TTCGTGAACG CGTTCTTCCG CTTCACGTGG 
TCGATGCGGC AGTACAGCTT TGCCGCGCTG CTGATCGCGG CCGCCCCCGA CCACCACACC 
TACCAGCAGC AGCCGGCGCT CAGCGAGAGC TTTTCGCGCC ACGCCGGGCG CATCGTCGCG 
CTGGCCGCCG AGACCTTCAA CGACGGCCTG CGGGCGGTCT ACCTGAGCTT TGCGGCGATG 
CTGTGGTTCA TGTCGCCGCT GGCCTTCGCG CTGGGCAGCG CGGGCGTGAT CTACATCCTC 
TACCAGCGCG AGTTCCGCTC CGACATCCTG GCGATCCTGA AGGACGCGGC GCGCGAGCCG 
ACCTGA
 
Protein sequence
MDWTLRVITL LPLADWLALG WFFTCWIGYV SFARRRASVE GSLIATSNQF RNRWMTQTTL 
RENRMIDGVV LQNLSTSPSF FASTTIFIIG GLIAALGATE KTSELVRELP FAARTSALIF 
DLKLLLLVGI FVNAFFRFTW SMRQYSFAAL LIAAAPDHHT YQQQPALSES FSRHAGRIVA 
LAAETFNDGL RAVYLSFAAM LWFMSPLAFA LGSAGVIYIL YQREFRSDIL AILKDAAREP 
T