Gene Lcho_0642 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0642 
Symbol 
ID6161906 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp693209 
End bp694291 
Gene Length1083 bp 
Protein Length360 aa 
Translation table11 
GC content55% 
IMG OID641663392 
ProductUDP-N-acetylglucosamine 2-epimerase 
Protein accessionYP_001789682 
Protein GI171057333 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0381] UDP-N-acetylglucosamine 2-epimerase 
TIGRFAM ID[TIGR00236] UDP-N-acetylglucosamine 2-epimerase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones76 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCCCGC TCGTCAAGCG ATTTCAGCAG TTCCCTGAGT TCGAAACCCG CGTTTGCGTG 
ACAGCACAGC ATCGACAAAT GCTTGACCAA GTGCTGCAAT TGTTCGATAT CCAGCCTGAG 
TATGACCTCG ACTTGATGAA GCCCGGCCAG AACCTGACTC AGATCACTAC CAGTATCATG 
CACGGCATTG ATCCGGTGCT GGACGACTTT AGGCCGCAGT GGGTGCTCGT TCATGGTGAC 
ACCACGACGT CCATGGCCAC GAGCCTAGCT GCTTTCTACA GACAGATACC AGTCGCCCAC 
GTGGAGGCCG GACTCCGCAC TGGCAACATC TACTCGCCGT GGCCCGAGGA GGTCAACCGG 
CAAATCACGG GGCGCATTGC ATCGCTGCAT TTCGCGCCAA CTGACGAAGC CAAGTTCAAC 
CTCCTGAAAG AGAATGTCGA ACCATCACGC ATCCGAGTGA CTGGCAACAC GGTCATTGAT 
GCGCTGTTGA GCGTCAGCCA CCGGATTGAC AACGACGCCG AGTTGAACCG AGAGATGGGA 
AATCTCTTTC CTTTCCTGGA TTCTTCTCGC AAGTTGATCT TGGTTACCGG CCATCGGCGC 
GAAAACTTCG GGCAGGGATT TGAGGCCGTA TGCAATGCAC TGCGCGATTT ATCAGAAGAT 
CCTCGCATCC AAATCGTATA CCCTGTTCAC TTAAACCCCA ATGTCCAAGA GCCAGTGCGG 
CGAATCCTTG GGCAAGCTCA AAATGTCCAT CTGATAGAGC CGCTGAACTA CCTGCCCTTC 
ATATACCTCA TGAAGCGCAG TTACATCATC CTGACCGATT CCGGAGGCAT CCAGGAAGAA 
GCGCCATCTC TGGGCAAACC AGTTCTGGTA ATGCGTGACA CTACAGAACG CCCAGAAGCC 
TTGGCGGCCG GCACTGTCCG ATTGGTTGGA ACAGACCGCG ACACCATCGT TCGTGAAGCG 
CGCAGACTCT TCGACGACCC TTCTGCATAT CGTGCAATGG CGTTTGCTCA CAACCCCTAC 
GGCGACGGCC AAGCCAGCGA TCGCATCATT CAAGCCTTCC GGCAACTCAA ACCCGCATCA 
TGA
 
Protein sequence
MAPLVKRFQQ FPEFETRVCV TAQHRQMLDQ VLQLFDIQPE YDLDLMKPGQ NLTQITTSIM 
HGIDPVLDDF RPQWVLVHGD TTTSMATSLA AFYRQIPVAH VEAGLRTGNI YSPWPEEVNR 
QITGRIASLH FAPTDEAKFN LLKENVEPSR IRVTGNTVID ALLSVSHRID NDAELNREMG 
NLFPFLDSSR KLILVTGHRR ENFGQGFEAV CNALRDLSED PRIQIVYPVH LNPNVQEPVR 
RILGQAQNVH LIEPLNYLPF IYLMKRSYII LTDSGGIQEE APSLGKPVLV MRDTTERPEA 
LAAGTVRLVG TDRDTIVREA RRLFDDPSAY RAMAFAHNPY GDGQASDRII QAFRQLKPAS