| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0641 |
|---|
| Symbol | |
|---|
| ID | 6161905 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 691929 |
|---|
| End bp | 693212 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 641663391 |
|---|
| Product | nucleotide sugar dehydrogenase |
|---|
| Protein accession | YP_001789681 |
|---|
| Protein GI | 171057332 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0677] UDP-N-acetyl-D-mannosaminuronate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR03026] nucleotide sugar dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 77 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCAAT CGTTCGACAC TATTTCCATC ATTGGTCTTG GCTACATCGG TCTGCCGACA
GCGGCTGTAT TTGCGAGTCG AAAGATCAAG GTCGTCGGGG TCGACGTTAA CGAATATGCG
GTTGAAACCA TCAATCAAGG CCGCATCCAC ATCGTCGAGC CGGATCTCGA CATGGTTGTG
CATGCAGCAG TGACAGAAGG CTATCTGCGG GCTACCACTC GACCCGAGCG AGCTCAGGCA
TTCCTTATCG CTGTGCCAAC GCCTTTCAAG AGTGGCCCCA ACGGGGATCA CGATCCGGAC
CTCTGCTACA TCGAACAGGC TTGCCGATCG ATTGCGCCGG TGCTCGAAAA GGGGAACCTC
GTCATTCTCG AGTCGACCTC GCCGGTTGGT GCCACCGAGC AAATGTCGGC TTGGCTGGCA
CAGGAACGGC CCGACCTGAC CTTTCCGCAG ACACACGGCG AAACGTCAGA CATCCGCATA
GCACACTGCC CGGAAAGGGT GCTGCCGGGT CATGTCCTGA AGGAATTGGT ACAAAACGAC
CGCGTCATTG GTGGCATGAC GCCTGCCTGC TCAGCAGTGG CCGCACGCTT GTACAAGACG
TTCGTGCTCG GCGAATGCGT GATCACGACG GCACGAACCG CCGAAATGTG CAAGTTGACG
GAAAACAGCT TTCGTGACGT CAACATTGCC TTTGCCAACG AGCTCTCGAT CATCTGCGAC
AAGCTCGGAA TCAACGTCTG GGAACTGATT CGGCTTGCAA ACAGGCACCC ACGCGTGAAC
ATACTGCAGC CCGGACCCGG AGTTGGCGGG CACTGCATTG CGGTCGATCC TTGGTTCATC
GTAAGCGCAG CACCCGATCA AGCTCGCCTG ATCCGTTCGG CTCGTGAGGT GAATGACAGC
AAGCCTGATT GGGTGATTGA CAAGGTCAAG GTCGCGGTGG CGGACAGCCT CATCAGCCAA
CCGGCCAAGA CAATCTCGGA TATCACCGTC GCCTGCTTCG GCTTGGCCTT CAAACCGGAC
ATCGATGACC TGCGCGAGAG CCCTGCAGCA TCTATCGCGC AGAAGATCGC AGCAAACCAC
CCCGGCTCGG TACTCGCGGT CGAGCCCAAT ATCGACCGAC TGCCTGAAAA GTGGCAAACC
CGACTGAATC TGACGTCGGT AGAAACTGCA CTTGCTTGTG CCGACGTGAT TCTCCTGTTG
GTCGATCACA AGCAATTCAA AGAAATTTCG CGTGAGCAAC TCCAACCGCT AAAAATCGTC
GATTGCCGCG GCCTATGGCA ATGA
|
|---|
| Protein sequence | MNQSFDTISI IGLGYIGLPT AAVFASRKIK VVGVDVNEYA VETINQGRIH IVEPDLDMVV
HAAVTEGYLR ATTRPERAQA FLIAVPTPFK SGPNGDHDPD LCYIEQACRS IAPVLEKGNL
VILESTSPVG ATEQMSAWLA QERPDLTFPQ THGETSDIRI AHCPERVLPG HVLKELVQND
RVIGGMTPAC SAVAARLYKT FVLGECVITT ARTAEMCKLT ENSFRDVNIA FANELSIICD
KLGINVWELI RLANRHPRVN ILQPGPGVGG HCIAVDPWFI VSAAPDQARL IRSAREVNDS
KPDWVIDKVK VAVADSLISQ PAKTISDITV ACFGLAFKPD IDDLRESPAA SIAQKIAANH
PGSVLAVEPN IDRLPEKWQT RLNLTSVETA LACADVILLL VDHKQFKEIS REQLQPLKIV
DCRGLWQ
|
|---|
| |