Gene Lcho_0638 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0638 
Symbol 
ID6161902 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp689126 
End bp690256 
Gene Length1131 bp 
Protein Length376 aa 
Translation table11 
GC content58% 
IMG OID641663388 
ProductTDP-4-oxo-6-deoxy-D-glucose transaminase 
Protein accessionYP_001789678 
Protein GI171057329 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0399] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 
TIGRFAM ID[TIGR02379] TDP-4-keto-6-deoxy-D-glucose transaminase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones76 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCCCGT TCAACAGGCC GCCCTACACG GGGCAGGAAG ATCAATACGT TCAAGCTGCC 
ATGCGCAGCG CGAAGATGTC CGGCGACGGT GCGTTCACCG AACGCAGTCA TCATTGGTTT 
CGTGAACAGT TGAAGTGCGA CTCCGCGTTG CTGACGCCAT CGGGCACGCA AGCGCTGGAA 
ATGGCGGCGA TCCTGCTCGA CCTTGAGCCT GGCGATGAAG TCATCATGCC GAGCTACACC 
TTTGTCAGCA CCGCCAATGC TTTCGCACTG CGTGGCGCGC AGATCGTGTT TGTCGACATC 
CGGCCAGACA CGATGAACAT CGACGAGAAC CTGATCGAAG CAGCCATCAC GGCGAAGACT 
CGTGCGATCG TCGTGGTGCA TTACGCCGGT GTGTCCTGCG AAATGGATCC GATCCTGGCC 
TTGGCAGAAA GACATGGCCT GAAGGTCATC GAGGATGCGG CTCAAGGCAT GATGTCCACC 
TACAAGGGCC GGCGACTTGG CGCCATCGGC CACCTGGGGG CCTACAGTTT CCACGAGACA 
AAGAACTACA CCAGTGGTGG CGAGGGCGGG CTACTCATTG TGAACGATCC GCGCTATGCC 
CAGCGCGCGG AAATCATCCG GGAGAAAGGC ACCAACCGCA GTTTGTTCTT CCGAGGCATG 
GTCGACAAAT ACAGTTGGGT CGACATCGGC AGCAGTTACC TTCCATCTGA ACTGCAGGCC 
GCCTACTTGT GGGGTCAACT GACGATGGCT GACGAAATCA ATCGTGACCG CCTCGCCACC 
TGGAACGCCT ATCACGCCGC ATTTGCAGAT CTTGAGACAA GCGGCCTGGT CGTGCGCCCT 
CATGTACCGG AACACTGCAA ACACAACGGT CACATGTATC AATTGAAGGC GAAGAACCTC 
GCGGAGAGGA CTGCCCTGCT CAAGCATCTG AAGGACGCAG ACATCCTCGC TGTCTTCCAT 
TACGTACCGC TGCACTCTGC CACTGCAGGC CGGAAATACA GCCGTTTTCA CGGTGAAGAC 
CGATACACCA CGGCCGAGAG CGAGCGGCTG ATTCGGCTTC CCTTCTGGTA CTCGATGTCG 
CCGGAGATTC GACAGAAGGT CATCGATACC GTGCACAGTT TCTACTCTTG A
 
Protein sequence
MIPFNRPPYT GQEDQYVQAA MRSAKMSGDG AFTERSHHWF REQLKCDSAL LTPSGTQALE 
MAAILLDLEP GDEVIMPSYT FVSTANAFAL RGAQIVFVDI RPDTMNIDEN LIEAAITAKT 
RAIVVVHYAG VSCEMDPILA LAERHGLKVI EDAAQGMMST YKGRRLGAIG HLGAYSFHET 
KNYTSGGEGG LLIVNDPRYA QRAEIIREKG TNRSLFFRGM VDKYSWVDIG SSYLPSELQA 
AYLWGQLTMA DEINRDRLAT WNAYHAAFAD LETSGLVVRP HVPEHCKHNG HMYQLKAKNL 
AERTALLKHL KDADILAVFH YVPLHSATAG RKYSRFHGED RYTTAESERL IRLPFWYSMS 
PEIRQKVIDT VHSFYS