| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0632 |
|---|
| Symbol | |
|---|
| ID | 6160178 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 678225 |
|---|
| End bp | 682472 |
|---|
| Gene Length | 4248 bp |
|---|
| Protein Length | 1415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641663382 |
|---|
| Product | Na-Ca exchanger/integrin-beta4 |
|---|
| Protein accession | YP_001789672 |
|---|
| Protein GI | 171057323 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 58 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACGT ACATCAGCGT CGACGACATC GTTTACAGCG AAGGTGACTC GCAAGCGGTC
TTCACCCTCC GGCTGAGTGG CGATGCCGCC ACCACTGCGA TCGACGTCAA TTTCTCGACC
ACCGACGGCA CCGCGCTCGA CGCCACCGAC TTCGACCACG TGACGGGCAT CGTCACGATC
CCGGTCGGCG ATACGAGTGC GACGATCAGC GTGCCGATCA CGGACGATGC CACGCTTGAA
ACCATCGAAG GCATCCTGCT CCAACTCTCC ACCACCACGC CGGGCGCGGT GCTCACCCGC
GGCACCGTCA CGGGGCTGAT CGTCGACAAC GACATGCCTG CCGGCGTGCC CAACGTGAGC
GCAGGCGATG TGGTGGTCGA TGAAACCGAC GGCATCGCCA CGGTCTACAT CACGCTCGAC
AAGCCCTCCG ACGTCGACGT CACCGTCCAC TACCAGACCC AGGCAGCCAC AGCAGCGCCC
GGCCTTCTGG ACACCGAGGG CGACTACGTC ACCGACAGCG ACAGCATCAC CATCCCGGCC
GGCCAGACCG TCGCCAGCGT CGACGTGCTG ATCAACAACG ACGCCCTCGC CGAAGGCCGC
GAGGTGTTCG CCCTGGCGTT GACCGGCGCC GTCAATGCCG TCATCACCGA CCCGCGTGCC
CACGTCGTCA TCCAGTACAA CGACGCCGCC GCCGTGCCCA CCCCGGTGGT CAGCGTGCAG
GGCGGCACGA TGGTGGAAAA CCAGGGCTAC GTCGACTTTC TCGTCACCCT GAGCGCACCC
GGCAGCGCCG AGGCCCGCGT CAACTACAAC ACCGGCGACG GCACCGCGCT GGACGGCGTC
GATTACGAGA GCGTCACCGG CACCCTGGTG TTCGCCCCCG GTGAAACATC GAAGACCGTG
CGCGTGCTGG TGGCCGACAA CGCCGTCATC GACGGGACCC GCACCTTCAG CCTCGGCCTC
AGCGGCATGA GCGGCCTGGT CAGTGGTGTG CTCACGGCGC AGGGCGTGAT CCTCGACAAC
GAATCGCTCA CGCCGCCCAC CGTGCTGGCG CCGGTGCTGA TCAACGCCAA TGCGGGTGCC
ACCGGCAACA TCCTGGGCGG CACGGGCTAC AACGACAGCC TGACCGGCGG CGCCGGTGAC
GACGTGCTCG ACGGCCGAGC ACTCGACGAC ACCATGAAGG GCGGCGCCGG CAACGACACC
TACATCGCCG AAGAAAGCGG CGGCCAGATC ACCGAAGAAG CGGCCAGCGG CAACGACACC
ATCATCAGTT ACCTGTCCAA CTACACCCTC TCGTCCACCA TCGAGAACCT GGTGCTCGGC
GGGGTGGCCA ACATCAGCGG CACCGGCAGT GCCGAGGCCA ACACGTTGAC CGGCAATACC
GGCAACAACA CCCTGAACGG CGCGGGTGGC AACGACACGA TCTACGGGGG TGCGGGCAAT
GACAGCCTGA CGGGTGGCAC GGGCACCGAC AGCCTGCTGG GTGGCGCGGG GGACGACACG
TACACCTACG ACAGCGGCGA CGTGATCGTG GAGGGGCTGA ACGAAGGTAA CGACACGATC
CTGAGCGCCG TGAGCCTGAC GTTGGCGGTG GCGAATGTCG AGGGCATCAC GTTGACGGGG
GCGGACAACG TCAATGCGAC GGGCGACGGG TTGGCGAATA CGTTGACCGG GAACACGGGC
AACAATGTGA TGGATGGGGG TGTGGGAGCC GATAGCCTGG CTGGTGGGCA AGGCGATGAC
ACCTATGTGG TCGACAACGC GGGAGACGTG ATCACCGAGG GGGCGGGCGC CGGAACGGAT
ACCGTTCAGG CGAGCATCAC GTACTCACTG GCAGGGCTTG CCAACGTCGA GAACATCACG
CTGACGGGCA GTGCAGCGAT CAACGCCACG GGCAACGCGC TGGCCAACCG TGTGATCGGC
AACGCTGGCG CGAACCGTCT GGTGGGCGAT GCTGGCAACG ACACCCTGGG CGGTGGGGCG
GGCAACGACA CCATGGTGGG CGGGCTGGGT GACGACGTCT ACTACGTTGA TGCAGCCGGG
GATGTGGTCA CGGAAGTCGC AGGCCAAGGC ACCGACACTG TGTATTCGAA CGTCAGCTAC
ACGCTGAGTT CGGAAGTCGA GTCTCTGGTG CTGACCGGCT CGGCTGGGTT GAGCGGGACG
GGCAATGACT CGGCGAACCT GCTGGCGGGC AATGCGGGCG CGAACAATCT GACCGGTGGC
CTGGGTAACG ACACGCTCAA CGGGGGGGCA GGTACCGATA GCCTGGCTGG TGGGCAAGGC
GATGACACCT ATGTGGTCGA CAACGCGGGA GACGTGATCA CCGAGGGGGC GGGTGCCGGA
ACGGATACCG TTCAGGCGAG CATCACGTAC TCACTGGCAG GGCTTGCCAA CGTCGAGAAC
ATCACGCTGA CGGGCAGTGC AGCGATCAAC GCCACGGGCA ACGCGCTGGC CAACCGTGTG
ATCGGCAACG CTGGCGCGAA CCGTCTGGTG GGCGATGCTG GCAACGACAC CCTGGGCGGT
GGGGCGGGCA ACGACACCAT GGTGGGCGGG CTGGGTGACG ACGTCTACTA CGTTGATGCA
GCCGGGGATG TGGTCACGGA AGTCGCAGGC CAAGGCACCG ACACGGTGTA TTCGAACGTC
AGCTACACGC TGAGTTCGGA AGTCGAGTCT CTGGTGCTGA CCGGCTCGGC TGGGTTGAGC
GGGACGGGCA ATGACTCGGC GAACCTGCTG GCGGGCAATG CGGGCGCGAA CAATCTGACC
GGTGGCCTGG GTAACGACAC GCTCAACGGG GGGGCAGGTA CCGATAGCCT GGCTGGTGGG
CAAGGCGATG ACACCTATGT GGTCGACAAC GCGGGAGACG TGATCACCGA GGGGGCGGGC
GCCGGAACGG ATACCGTTCA GGCGAGCATC ACGTACTCAC TGGCAGGGCT TGCCAACGTC
GAGAACATCA CGCTGACGGG CAGTGCAGCG ATCAACGCCA CGGGCAACGC GCTGGCCAAC
CGTGTGATCG GCAACGCTGG CGCGAACCGT CTGGTGGGCG ATGCTGGCAA CGACACCCTG
GGCGGTGGGG CGGGCAACGA CACCATGGTG GGCGGGCTGG GTGACGACGT CTACTACGTT
GATGCAGCCG GGGATGTGGT CACGGAAGTC GCAGGCCAAG GCACCGACAC GGTGTATTCG
AACGTCAGCT ACACGCTGAG TTCGGAAGTC GAGTCTCTGG TGCTGACCGG CTCGGCTGGG
TTGAGCGGGA CGGGCAATGA CTCGGCGAAC CTGCTGGCGG GCAATGCGGG CGCGAACAAT
CTGACCGGTG GCCTGGGTAA CGACACGCTC AACGGGGGGG CAGGTACCGA TAGCCTGGCT
GGTGGGCAAG GCGATGACAC CTATGTGGTC GACAACGCGG GAGACGTGAT CACCGAGGGG
GCGGGTGCCG GAACGGATAC CGTTCAGGCG AGCATCACGT ACTCACTGGC AGGGCTTGCC
AACGTCGAGA ACATCACGCT GACGGGCAGT GCAGCGATCA ACGCCACGGG CAACGCGCTG
GCCAACCGTG TGATCGGCAA CGCTGGCGCG AACCGTCTGG TGGGCGATGC TGGCAACGAC
ACCCTGGGCG GTGGGGCGGG CAACGACACC ATGGTGGGCG GGCTGGGTGA CGACGTCTAC
TACGTTGATG CAGCCGGGGA TGTGGTCACG GAAGTCGCAG GCCAAGGCAC CGACACGGTG
TATTCGAACG TCAGCTACAC GCTGAGTTCG GAAGTCGAGT CTCTGGTGCT GACCGGCTCG
GCTGGGTTGA GCGGGACGGG CAATGACTCG GCGAACCTGC TGGCGGGCAA TGCGGGCGCG
AACAATCTGA CCGGTGGCCT GGGTAACGAC ACCCTCAATG GTGCGGCAGG TAACGATGTG
CTGAATGGTG GCGTGGGTTC GGACCTATTT GTGTTCAACG GAACCCTGAA CGCTGCATCC
AACGTCGACA CCATTTCTGA TTTCTCCGCA GGCGATCGGA TTGCGCTGGA CAATGACATA
TTTTCGGCGC TTGGTGCGGC GGGCACCTTG AACTCGTCAT CGTTCTACGC TGGTGCGGGT
TTTGTCGAGA GTACGAGTGC CGCACAAGCT GCCGGCGTGT ATTACGATCT GAACACGGGT
AGCCTTTATT ACGATGCAGA CGGATTTGGC TCGGGTGTGG GTGTCAAGTT TGCTGAGGTT
TCAGGCATCC CGACCTTGAG CAACGCGTCT TTCATTGTTC AGGAGTGA
|
|---|
| Protein sequence | MATYISVDDI VYSEGDSQAV FTLRLSGDAA TTAIDVNFST TDGTALDATD FDHVTGIVTI
PVGDTSATIS VPITDDATLE TIEGILLQLS TTTPGAVLTR GTVTGLIVDN DMPAGVPNVS
AGDVVVDETD GIATVYITLD KPSDVDVTVH YQTQAATAAP GLLDTEGDYV TDSDSITIPA
GQTVASVDVL INNDALAEGR EVFALALTGA VNAVITDPRA HVVIQYNDAA AVPTPVVSVQ
GGTMVENQGY VDFLVTLSAP GSAEARVNYN TGDGTALDGV DYESVTGTLV FAPGETSKTV
RVLVADNAVI DGTRTFSLGL SGMSGLVSGV LTAQGVILDN ESLTPPTVLA PVLINANAGA
TGNILGGTGY NDSLTGGAGD DVLDGRALDD TMKGGAGNDT YIAEESGGQI TEEAASGNDT
IISYLSNYTL SSTIENLVLG GVANISGTGS AEANTLTGNT GNNTLNGAGG NDTIYGGAGN
DSLTGGTGTD SLLGGAGDDT YTYDSGDVIV EGLNEGNDTI LSAVSLTLAV ANVEGITLTG
ADNVNATGDG LANTLTGNTG NNVMDGGVGA DSLAGGQGDD TYVVDNAGDV ITEGAGAGTD
TVQASITYSL AGLANVENIT LTGSAAINAT GNALANRVIG NAGANRLVGD AGNDTLGGGA
GNDTMVGGLG DDVYYVDAAG DVVTEVAGQG TDTVYSNVSY TLSSEVESLV LTGSAGLSGT
GNDSANLLAG NAGANNLTGG LGNDTLNGGA GTDSLAGGQG DDTYVVDNAG DVITEGAGAG
TDTVQASITY SLAGLANVEN ITLTGSAAIN ATGNALANRV IGNAGANRLV GDAGNDTLGG
GAGNDTMVGG LGDDVYYVDA AGDVVTEVAG QGTDTVYSNV SYTLSSEVES LVLTGSAGLS
GTGNDSANLL AGNAGANNLT GGLGNDTLNG GAGTDSLAGG QGDDTYVVDN AGDVITEGAG
AGTDTVQASI TYSLAGLANV ENITLTGSAA INATGNALAN RVIGNAGANR LVGDAGNDTL
GGGAGNDTMV GGLGDDVYYV DAAGDVVTEV AGQGTDTVYS NVSYTLSSEV ESLVLTGSAG
LSGTGNDSAN LLAGNAGANN LTGGLGNDTL NGGAGTDSLA GGQGDDTYVV DNAGDVITEG
AGAGTDTVQA SITYSLAGLA NVENITLTGS AAINATGNAL ANRVIGNAGA NRLVGDAGND
TLGGGAGNDT MVGGLGDDVY YVDAAGDVVT EVAGQGTDTV YSNVSYTLSS EVESLVLTGS
AGLSGTGNDS ANLLAGNAGA NNLTGGLGND TLNGAAGNDV LNGGVGSDLF VFNGTLNAAS
NVDTISDFSA GDRIALDNDI FSALGAAGTL NSSSFYAGAG FVESTSAAQA AGVYYDLNTG
SLYYDADGFG SGVGVKFAEV SGIPTLSNAS FIVQE
|
|---|
| |