| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0627 |
|---|
| Symbol | |
|---|
| ID | 6159970 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 674216 |
|---|
| End bp | 675340 |
|---|
| Gene Length | 1125 bp |
|---|
| Protein Length | 374 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641663377 |
|---|
| Product | GDP-mannose 4,6-dehydratase |
|---|
| Protein accession | YP_001789667 |
|---|
| Protein GI | 171057318 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1089] GDP-D-mannose dehydratase |
|---|
| TIGRFAM ID | [TIGR01472] GDP-mannose 4,6-dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACCC CTCAAAAAGT CGCCCTCATC ACCGGCGTCA CTGGCCAAGA CGGCGCCTAC
CTCGCCGAGT TCCTGCTCAA AAAGGGCTAC CAGGTGCACG GCATCAAGCG CCGCAGCAGC
CTGTTCAACA CCGACCGCAT CGATCATCTG TACCAGGATC CGCACGTCGA GCAGCGCAAT
TTCACGCTGC ACTACGGTGA CCTGACCGAC TCGACCAGCC TGGTGCGCAT CGTCCAGCTG
GTGCAGCCCG ACGAGATCTA CAACCTGGCC GCCCAGAGCC ACGTCGCCGT CTCGTTCGAG
GAGCCCGAAT ACACCGCCAA CGCCGACGGC ATCGGCGCGC TGCGCCTGCT CGAAGCCATC
CGCATCTGCG GCCTGGAAAA GAAGACCCGT TTCTACCAGG CGTCCACCAG CGAGCTCTAC
GGCCTGGTGC AGGAAACCCC GCAGAAGGAA ACCACCCCCT TCTACCCGCG CAGCCCCTAC
GCGGTGGCCA AGATGTACGC CTACTGGATC ACGGTCAACT ACCGCGAGGC CTACGGCATC
TATGCCTGCA ACGGCGTGCT GTTCAACCAC GAAAGCCCGA TCCGCGGCGA GACCTTCGTC
ACCCGCAAGA TCACGCGTGC GGTCGCCCGC ATCGCGCTGG GCCTGCAGGA CTGCCTGTAC
CTGGGCAACA TGAGCGCGCT GCGCGACTGG GGCCATGCGC GCGATTACGT CGAGATGCAG
TGGCTGATGC TGCAACAGCA GAGCGCCGAA GACTTCGTCA TCGCCACCGG CGTGCAGTAC
AGCGTGCGCC AGTTCGTCGA GAAGGCGGCT GCCGAACTAG GCATCACGAT CGCCTTCGAA
GGCGAGGGCG AGCAGGAGTT CGGCTACGTG TCGGCCGTCA CCGGCAAGCA GGCCAAGTGC
AAGGTGGGCG ATGTGGTCGT CAAGGTCGAC CCGCGCTACT ACCGCCCGAC CGAAGTCGAG
ACCTTGCTCG GCGACCCGAC CAAGGCCAAG GTCAAGCTCG GCTGGACGCC GCGCACCACC
TTCGACGAAC TCGTCAAGGA AATGATCGAG GCCGACTACA CCAGCGCGCG CAAGGACAGC
CTGGTCAAGA TGGCCGGTTT CCAGGCCTTC GATCACCACG AGTGA
|
|---|
| Protein sequence | MTTPQKVALI TGVTGQDGAY LAEFLLKKGY QVHGIKRRSS LFNTDRIDHL YQDPHVEQRN
FTLHYGDLTD STSLVRIVQL VQPDEIYNLA AQSHVAVSFE EPEYTANADG IGALRLLEAI
RICGLEKKTR FYQASTSELY GLVQETPQKE TTPFYPRSPY AVAKMYAYWI TVNYREAYGI
YACNGVLFNH ESPIRGETFV TRKITRAVAR IALGLQDCLY LGNMSALRDW GHARDYVEMQ
WLMLQQQSAE DFVIATGVQY SVRQFVEKAA AELGITIAFE GEGEQEFGYV SAVTGKQAKC
KVGDVVVKVD PRYYRPTEVE TLLGDPTKAK VKLGWTPRTT FDELVKEMIE ADYTSARKDS
LVKMAGFQAF DHHE
|
|---|
| |