Gene Lcho_0622 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0622 
Symbol 
ID6160186 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp670102 
End bp670653 
Gene Length552 bp 
Protein Length183 aa 
Translation table11 
GC content68% 
IMG OID641663372 
ProductdTDP-4-dehydrorhamnose 3,5-epimerase 
Protein accessionYP_001789662 
Protein GI171057313 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 
TIGRFAM ID[TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value0.844437 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACATCA TCCGCACCGA CATCGCCGAC GTGCTGATCA TCGAACCCAA GGTGTTCGGT 
GACGCACGCG GCTTCTTCAT GGAAAGCTGG AACCAGAGCC GCTTCGACGC CGCCGTCGGC 
AGCCCGGTCC GCTTCGTTCA GGACAACCAC AGCCGCTCGG CCCGCGGCGT GCTGCGCGGC 
CTGCACTACC AGCTGCCGCC GCACGCGCAG GGCAAGCTGG TGCGTGTCAC CCGCGGCGTG 
GTGTTCGACG TGGCGGTCGA TCTGCGTCGC AGCAGTCCGA CCCTGGGGCG CTGGATCTGT 
ACCGAACTCA GCGCAGATAA CCACCGCGAG CTCTGGATCC CGCCCGGTTT TGCGCATGGA 
TTCATGGTGC TGAGCGACAG CGCCGACTTC CTCTACAAGA CCACCGACTA CCACGCCCCG 
GACTGCGAAG CCGCCGTGCG CTGGGACGAC CCCGAGCTGG CCATCGCCTG GCCCGCGCTC 
GACACGCCGC CGCTGCTGTC GGCCAAGGAC CAGCAGGCGC CCGGCTGGCG CGAGGCCCGC 
TTGTTCGACT GA
 
Protein sequence
MNIIRTDIAD VLIIEPKVFG DARGFFMESW NQSRFDAAVG SPVRFVQDNH SRSARGVLRG 
LHYQLPPHAQ GKLVRVTRGV VFDVAVDLRR SSPTLGRWIC TELSADNHRE LWIPPGFAHG 
FMVLSDSADF LYKTTDYHAP DCEAAVRWDD PELAIAWPAL DTPPLLSAKD QQAPGWREAR 
LFD