| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0617 |
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| Symbol | |
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| ID | 6160100 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 664370 |
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| End bp | 665809 |
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| Gene Length | 1440 bp |
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| Protein Length | 479 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641663367 |
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| Product | DEAD/DEAH box helicase domain-containing protein |
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| Protein accession | YP_001789657 |
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| Protein GI | 171057308 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.028654 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGATA CCCCTGACGC AGCCGAACTG GTAGCTGCCC CCGCCCGCTT CGACTCTCTG
CCGCTGGATC CCAAGCTCCT GCGCGCCATC GTCGACGCCG GATATCTGAC CATGACGCCG
ATCCAGGCCA AGGCGATCCC GATCGTCCTG GACGGGCGAG ACGTGATGGG CGCAGCCCAG
ACCGGCACCG GCAAGACGGC CGCGTTTTCG CTGCCGCTGC TGCAGAAGAT GCTGCGGCAC
GAAAACGCCA GCGCATCGCC TGCGCGCCAT CCGGTACGCG CCCTGGTCCT GGCGCCCACA
CGCGAGCTGG CCGACCAGGT GGCCAACAAC GTCAAGACCT ACGCCAGGCA CAGCCAGCTG
AGAGTGACCT GCGTCTTCGG CGGCATCGAC ATGGCACCCC AGACGGCCGA GCTCAAGCGC
GGCGTCGAGG TGCTGATCGC GACGCCGGGG CGGCTGCTGG ATCACATCCA GGCCAAGAAC
TGCCAGCTCA ACCAGGTCGA ATATGTGGTG CTCGACGAAG CCGACCGCAT GCTCGACATC
GGTTTCCTGC CCGACCTGCA GCGCATCCTG AGCTACCTGC CCAAGACCCG CCAGACGCTG
CTGTTCTCGG CCACGTTCTC GCCCGAGATC AAGAAGCTGG CGCAGAGCTA CCTGCAGGAC
CCGCTGCTGG TCGAAGTGGC ACGCCCGAAC GCGACGGCCA CCAACGTCGA GCAACGCTTC
TACAGCGTGA CCGACGATGA CAAGCGCCGC ACCGTGCTGC ACATCCTGCG CGAGCGTTCG
ATCACGCAGG CGATCGTCTT CGTCAACTCC AAGCTCGGCG CCGCACGCCT GGCTCGTTCG
TTCGAGCGCG ACGGCCTGCG GACATCGGCC CTGCACGGCG ACAAGTCGCA GGACGAACGC
CTGAAGGCGC TCGACGCCTT CAAGCGCGGC GAGGTCGACG TGCTGGTGGC CACCGATGTG
GCCGCGCGTG GCCTGGACAT CGCCGACCTG CCCGCCGTCT TCAACTTCGA CATTCCCTTC
AATGCGGAAG ACTATGTCCA CCGGATCGGC CGCACCGGCC GCGCCGGGGC ATCGGGCCTG
GCCGTGTCGC TGGTGTCGCA TGACGACAAC CGGCTGGTTT CCGACATCGA GCAGCTGATC
AAGAAGAAGA TCGAGATCGA GGCGATCGAA CTCAACGACG AGCGCCCCCG TCGGCCGCCC
CGTCGCGAGA TCGTCGATGA CGTGGCCGTG GTGGATGCCC CTGCACCACG TTACAGCCGC
CCGCCCAGTC GCACGAGCGT CGATCCGTTC TTCGAGCGCC CCTATCAGGC CGACCCCGAC
GCGTCGCCGG TGTGGGAACG TGGCAACAGC ACGCCGGCGG TGCCCAGCAG TGGCGTGAGC
CGGTTCATCA AGCACAAGCG CAAGGTGGCG ACGCTGCTGG GCGGCAAGCT GCCGACCTGA
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| Protein sequence | MTDTPDAAEL VAAPARFDSL PLDPKLLRAI VDAGYLTMTP IQAKAIPIVL DGRDVMGAAQ
TGTGKTAAFS LPLLQKMLRH ENASASPARH PVRALVLAPT RELADQVANN VKTYARHSQL
RVTCVFGGID MAPQTAELKR GVEVLIATPG RLLDHIQAKN CQLNQVEYVV LDEADRMLDI
GFLPDLQRIL SYLPKTRQTL LFSATFSPEI KKLAQSYLQD PLLVEVARPN ATATNVEQRF
YSVTDDDKRR TVLHILRERS ITQAIVFVNS KLGAARLARS FERDGLRTSA LHGDKSQDER
LKALDAFKRG EVDVLVATDV AARGLDIADL PAVFNFDIPF NAEDYVHRIG RTGRAGASGL
AVSLVSHDDN RLVSDIEQLI KKKIEIEAIE LNDERPRRPP RREIVDDVAV VDAPAPRYSR
PPSRTSVDPF FERPYQADPD ASPVWERGNS TPAVPSSGVS RFIKHKRKVA TLLGGKLPT
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