| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0609 |
|---|
| Symbol | |
|---|
| ID | 6159856 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 658016 |
|---|
| End bp | 658768 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641663359 |
|---|
| Product | 3-oxoacyl-(acyl-carrier-protein) reductase |
|---|
| Protein accession | YP_001789649 |
|---|
| Protein GI | 171057300 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | [TIGR01830] 3-oxoacyl-(acyl-carrier-protein) reductase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0000000540972 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAACCCCG CCGCTGATAC GACCCCCGCC CAGATCGCCC TCGTGACCGG CGCCAGCCGC
GGCATCGGCC GCGCGATTGC GCTGACGCTG GCCCAGCGTG GCTACAAGGT GATCGGCACG
GCCACCAGCG AGTCCGGCGC CGCGGCGATC GCCGACGCAC TGGCCGCCTA CGGCGGCCGT
GGCCTGGCAC TCGACGTGAC CGACAGCGCT GCGCTCGACG CGGCGATCGA CGGCATCGTC
AAGCAGGACG GCGGTCTGCA CGTGCTGGTC AACAACGCCG GCATCACCCG CGACACGCTG
GCGATGCGAC TGAAGGACGA CGACTGGGAC GCGGTCATCG ACACCAACCT GAAGGCCGTC
TTCCGCGCCT GCCGCGCGGC GATCCGGCCG ATGATGAAAC AGCGCTCGGG CCGCATCATC
AACATCACCT CGGTGGTGGG CGCGTCGGGC AACCCGGGCC AGGCCAACTA TTGCGCCTCG
AAGGCCGGCG TGGCCGGAAT GACCCGCTCG CTGGCTCGCG AACTGGGTAG CCGCAACATC
ACGGTCAACT GCGTCGCACC GGGCTTCATC GCCACCGACA TGACCGAATC GCTGGCCGAG
GCACAGAAGG CCGCCTTGAT GGCGCAGATT CCGCTGGGCC GTCTGGGCTC GCCGGCGGAC
ATCGCCGAGG CCGTCGCCTT CCTCGCCTCG CCGGCCGCGG CCTACATCAC CGGCACCGAA
TTGCACGTCA ACGGCGGCAT GTACATGAAT TGA
|
|---|
| Protein sequence | MNPAADTTPA QIALVTGASR GIGRAIALTL AQRGYKVIGT ATSESGAAAI ADALAAYGGR
GLALDVTDSA ALDAAIDGIV KQDGGLHVLV NNAGITRDTL AMRLKDDDWD AVIDTNLKAV
FRACRAAIRP MMKQRSGRII NITSVVGASG NPGQANYCAS KAGVAGMTRS LARELGSRNI
TVNCVAPGFI ATDMTESLAE AQKAALMAQI PLGRLGSPAD IAEAVAFLAS PAAAYITGTE
LHVNGGMYMN
|
|---|
| |