| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0605 |
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| Symbol | |
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| ID | 6159883 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 655221 |
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| End bp | 655829 |
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| Gene Length | 609 bp |
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| Protein Length | 202 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641663355 |
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| Product | RNA polymerase sigma factor RpoE |
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| Protein accession | YP_001789645 |
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| Protein GI | 171057296 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000000000948588 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | ATGAGCGCTG ACGCCGACGC CCTGCTGGTC GAGCGCGCCA AGCTGGGCGA GATGCAGGCC
TTCGAGATGC TGGTGGTCAA GTACCAGCGG CGCATCGAAC GCCTGATCGG CCGCTTCGTG
CGCGACACCG ACCTGGTCGC CGACGTGGCG CAGGAAACCT TCATCCGCGC CTACCGCGCG
CTGCCACAGT TCCGCGGCGA GAGCGCGTTC TACACCTGGC TCTACCGGAT CGCGGTCAAC
ACCGCGAAGA AGACCCTGGC CGACCTGAAG CGCGATCCGG TCATGACCGA ATCCGCGCTT
GCCGCGGCTC GTCAGGACGA CGACGAAACT TCCCGGCCCG AACACGAACT AAGCCACAAC
GAGACGCCCG AAGCGGTCCT GGCCAGCCGC GAGATCGCAG CGACCGTCAA CGCGGCGATC
CAGGCCTTGC CGGAGGATCT GCGCCAAGCG GTCCTGTTGC GAGAAGTCGA AGGCCTGTCC
TACGAAGAGA TTGCCAGCGC GATGAACTGC CCGATCGGCA CCGTGCGCTC GCGCATCTTC
CGCGCCCGCG AGGCCATCGC CACGCGGTTG CGGCCTTTGC TGGACACCCG CGAGGGGCAG
CGCTGGTGA
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| Protein sequence | MSADADALLV ERAKLGEMQA FEMLVVKYQR RIERLIGRFV RDTDLVADVA QETFIRAYRA
LPQFRGESAF YTWLYRIAVN TAKKTLADLK RDPVMTESAL AAARQDDDET SRPEHELSHN
ETPEAVLASR EIAATVNAAI QALPEDLRQA VLLREVEGLS YEEIASAMNC PIGTVRSRIF
RAREAIATRL RPLLDTREGQ RW
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