| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0593 |
|---|
| Symbol | |
|---|
| ID | 6159702 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 643161 |
|---|
| End bp | 644264 |
|---|
| Gene Length | 1104 bp |
|---|
| Protein Length | 367 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641663343 |
|---|
| Product | Beta-N-acetylhexosaminidase |
|---|
| Protein accession | YP_001789633 |
|---|
| Protein GI | 171057284 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1472] Beta-glucosidase-related glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.0144455 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCACT CCCCCGTCGT TCTGGACATC GCCGGCACCA CGCTCGACGC CGACGACCGC
CGTCGCCTGC AGCACCCGCT CGCCGGCGGG CTGATCCTGT TTGCGCGCAA CTGGGTCGAC
CGCCGCCAGC TGGTCACGCT GATCGCCGAG ATCAAGGACC TGCGGCCCGA CCTGCTGATC
TGCGTCGACC ACGAAGGCGG GCGGGTGCAA CGCTTCAAGA CCGACGGGTT CACCCACCTG
CCGCCGATGC GCGCGCTCGG CGAACGCTGG ATGCGCGACG AGCGCGGCCA GCCCGGCAGC
GGCGCGATGC GTGCCTGCGA GGCCGCCACC GCCACCGGCT ACGTGCTGGC GGCGGAGCTG
CGCGCCTGTG GGGTCGACCT CAGCTTCACG CCGGTGCTCG ACCTCGAACA CGCGCACAGC
AACGTGATCG GCGACCGCGC GCTGCACCGC GACGCCCGCG TCGCCACGCT GCTGGCCAAG
AGCCTGATGC ACGGCCTGCT GCAGGCCGGC ATGGGCAACT GCGGCAAACA TTTCCCCGGC
CACGGCTGGG CCCGGGCCGA CAGCCACGTC GCCATCCCGC GCGACACCCG CTCGCTCAAG
GCCATCCTGG CCGACGACGC CCTGCCCTAC GCCTGGCTGT CGAGCAGCCT GACGGCGGTG
ATGCCGGCGC ACGTGATCTA CCCGAAGGTC GATGCGCGCC CGGCCGGCTT CTCGGCGCGC
TGGCTGCAGG AGATCCTGCG TGACCAGTTC GGCTTCACCG GCGCCGTCTT CAGCGACGAC
CTCAGCATGG CGGCGGCGCG CTCGGTGCCC GACGTGCAGG GCGGCGCCGA GCTGAGCTAC
AGCCAGGCCG CGCTGCTCGC GCTGGAGGCG GGCTGCGACA TGGTGCTGCT GTGCAACCAG
TCGCTCGGCG ACGGCGGCCG GGCCGTCGAT GAACTGCTCG ACGGCCTGGG CGACGCCATC
GAACAAGGCC GATGGAGACC CGACCCGGAC AGCGAAACCC GCCGCATCGC CCTGCTGCCG
CAGACCCCGC CGCTGCCGTG GGACGAGCTG ATGCACCACG CGCCCTACCA GCGCGCGCTG
GAACTGATCG GCGAGCCGGG CTGA
|
|---|
| Protein sequence | MNHSPVVLDI AGTTLDADDR RRLQHPLAGG LILFARNWVD RRQLVTLIAE IKDLRPDLLI
CVDHEGGRVQ RFKTDGFTHL PPMRALGERW MRDERGQPGS GAMRACEAAT ATGYVLAAEL
RACGVDLSFT PVLDLEHAHS NVIGDRALHR DARVATLLAK SLMHGLLQAG MGNCGKHFPG
HGWARADSHV AIPRDTRSLK AILADDALPY AWLSSSLTAV MPAHVIYPKV DARPAGFSAR
WLQEILRDQF GFTGAVFSDD LSMAAARSVP DVQGGAELSY SQAALLALEA GCDMVLLCNQ
SLGDGGRAVD ELLDGLGDAI EQGRWRPDPD SETRRIALLP QTPPLPWDEL MHHAPYQRAL
ELIGEPG
|
|---|
| |